PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G011385_P01
Common NameLOC103644151
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family LBD
Protein Properties Length: 164aa    MW: 17625.7 Da    PI: 7.7553
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G011385_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260114.95.2e-36211211101
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +CaaCk +rrkC ++C+lapyfpa++p+++a+v+++FGasn+ ++l++lp +er +a+++++ eA+ r++dPvyG++gv+ +lq +++ ++ 
  GRMZM2G011385_P01  21 RCAACKNQRRKCGQGCALAPYFPASDPQRYACVQRVFGASNIARMLQNLPVHERARAADTMAVEARRRVQDPVYGCAGVVGHLQGEIRATQC 112
                        6******************************************************************************************* PP

             DUF260  93 elallkeel 101
                        ela++++++
  GRMZM2G011385_P01 113 ELARTQAQI 121
                        ****99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.85720121IPR004883Lateral organ boundaries, LOB
PfamPF031953.0E-3521118IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MSTGANTEAA ASSSPSPGNK RCAACKNQRR KCGQGCALAP YFPASDPQRY ACVQRVFGAS  60
NIARMLQNLP VHERARAADT MAVEARRRVQ DPVYGCAGVV GHLQGEIRAT QCELARTQAQ  120
IAVHAAVARA HPAPGPLQQQ EEEEEDDDAR EPFQGLDAYA LVPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-31101251115LOB family transfactor Ramosa2.1
5ly0_B8e-31101251115LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G011385
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G011385_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008665568.11e-116LOB domain-containing protein 24
SwissprotP594676e-39LBD23_ARATH; LOB domain-containing protein 23
SwissprotP594685e-39LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A1D6L7131e-115A0A1D6L713_MAIZE; LOB domain-containing protein 23
STRINGGRMZM2G011385_P011e-116(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52823562
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.19e-38LOB domain-containing protein 24