PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G012724_P03
Common NameLOC100281558
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 254aa    MW: 26744.3 Da    PI: 7.595
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G012724_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY25.82.1e-082273560
                       EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY 35 kkkversaedpkvveitYegeHnhek 60
                       kkkvers  d++v++i+Y+g Hnh+k
  GRMZM2G012724_P03  2 KKKVERSLADGRVTQIVYKGAHNHPK 27
                       9***********************85 PP
2WRKY105.13.7e-33130188159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDg++WrKYGqK+vkg+++prsYY+Ct+agCpv+k+ver+ +d ++v++tYeg+Hnh+
  GRMZM2G012724_P03 130 LDDGFRWRKYGQKVVKGNPNPRSYYKCTTAGCPVRKHVERACHDARAVITTYEGKHNHD 188
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508119.443128IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.1E-5228IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-36115190IPR003657WRKY domain
SuperFamilySSF1182902.62E-29122190IPR003657WRKY domain
PROSITE profilePS5081137.929125190IPR003657WRKY domain
SMARTSM007749.5E-38130189IPR003657WRKY domain
PfamPF031068.2E-26131188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MKKKVERSLA DGRVTQIVYK GAHNHPKPLS TRRNSSGGVA AAEEQAANNS SLSGCGGPEH  60
SGGATAENSS VTFGDDEAEN GSQRSGGDEP DAKRWKAEDG ENEGSSGAGG GKPVREPRLV  120
VQTLSDIDIL DDGFRWRKYG QKVVKGNPNP RSYYKCTTAG CPVRKHVERA CHDARAVITT  180
YEGKHNHDVP VGRGAASRAA AAAPLLGSGG GQMDHRHQQP YTLEMLSGGG GGYGGGYAAK  240
DEPRDDLFVD SLLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-37104190177Probable WRKY transcription factor 4
2lex_A4e-37104190177Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.972730.0endosperm| leaf| meristem| ovary| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G012724
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and embryos. Levels drop rapidly but transiently in the embryos of imbibed seeds. {ECO:0000269|PubMed:19199048}.
UniprotTISSUE SPECIFICITY: Expressed in aleurone cells (PubMed:15618416). Mostly expressed in aleurone layers and leaves, and, to a lower extent, in roots, panicles and embryos (PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:26025535}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G012724_P03
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570970.0EU957097.1 Zea mays clone 1582655 WRKY53 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008647807.11e-159WRKY53 - superfamily of TFs having WRKY and zinc finger domains isoform X1
SwissprotQ6IEQ76e-81WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLA0A3L6E8L61e-158A0A3L6E8L6_MAIZE; WRKY transcription factor WRKY24
STRINGGRMZM2G012724_P011e-159(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.14e-60WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]