PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G015433_P01

Common Name

WRKY119, ZEAMMB73_867840, Zm.134348

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

WRKY

Protein Properties

Length: 229aa MW: 24295.5 Da PI: 8.488

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G015433_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.7	2.1e-32	142	200	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk++ fprsYYrCt+++C vkk+v+r a+d+++v++tYeg Hnh+ GRMZM2G015433_P01 142 LDDGYRWRKYGQKAVKNTAFPRSYYRCTHHTCDVKKQVQRLAKDTSIVVTTYEGVHNHP 200 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.7E-33	128	200	IPR003657	WRKY domain
SuperFamily	SSF118290	2.22E-28	134	201	IPR003657	WRKY domain
PROSITE profile	PS50811	28.461	137	202	IPR003657	WRKY domain
SMART	SM00774	1.4E-37	142	201	IPR003657	WRKY domain
Pfam	PF03106	7.3E-26	143	200	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MENSTLHGGS CQQPNTQLDT ASCLLAPLPP VVAEPQPEQQ HACTDAPPTS LAPGAAMSCP 60 PPPAAVDWAS LLLPPSTSGA SEVGCGVSAV TTVAAGSKAG ATAGEGDNSK TVKAGKQGGG 120 RGKNKVSRPR FAFQTRSEND ILDDGYRWRK YGQKAVKNTA FPRSYYRCTH HTCDVKKQVQ 180 RLAKDTSIVV TTYEGVHNHP CEKLMEALSP ILKQLQLLSQ LQSCTNQLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-25	132	199	7	74	Probable WRKY transcription factor 4
2lex_A	5e-25	132	199	7	74	Probable WRKY transcription factor 4
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Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G015433

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G015433_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ728245	0.0	KJ728245.1 Zea mays clone pUT6522 WRKY transcription factor (WRKY119) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001148624.1	1e-169	WRKY23 - superfamily of TFs having WRKY and zinc finger domains
TrEMBL	K7VHJ9	1e-169	K7VHJ9_MAIZE; Putative WRKY DNA-binding domain superfamily protein
STRING	GRMZM2G015433_P01	1e-170	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1100	38	133
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64000.1	7e-49	WRKY DNA-binding protein 56

Link Out ? help Back to Top
Phytozome	GRMZM2G015433_P01