PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G016637_P01
Common NameLOC103629174
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Trihelix
Protein Properties Length: 335aa    MW: 36762.8 Da    PI: 6.269
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G016637_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix68.11.7e-2153122170
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 
                        +W++ e+ a +++r ++++++ ++k++k+lWe+vs++++++gf r+p qCk+kw+nl +r+k +++ +  
  GRMZM2G016637_P01  53 QWSHAETAAFLAVRADLDHSFLTTKRNKALWEAVSARLHAQGFARTPDQCKSKWKNLVTRFKGTEAAAAA 122
                        7**************************************************************9987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122035.97E-2252117No hitNo description
Gene3DG3DSA:1.10.10.609.3E-453109IPR009057Homeodomain-like
PfamPF138373.3E-1653119No hitNo description
PROSITE profilePS500907.49154110IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDPFHHLNSS FSNPYHPLLS PSPPHFPLPP PPPQLPSVSA ASSASLERER LPQWSHAETA  60
AFLAVRADLD HSFLTTKRNK ALWEAVSARL HAQGFARTPD QCKSKWKNLV TRFKGTEAAA  120
AAAAADPASA QQQQPRPQFP FHDEVRRIFD ARAERAQALE RKRAKGKGVR TAAAAALDDE  180
GAGEGDDAAD VDDDEEDEDE EAAAGDEEAG GGLPAAADAG GRAGAKKRRR KQARAAAARA  240
AAGQGEVEAM LREFMRRQAE MEERWAEAAE AREAERRARE EEWRAAMVAL GEERLALVRR  300
WREREDALRA RAEEREERRH QLVAALLAKL GGADC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225230KKRRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.376480.0ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G016637
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G016637_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9463420.0EU946342.1 Zea mays clone 305005 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023156206.10.0trihelix transcription factor GT-3b
RefseqXP_023156207.10.0trihelix transcription factor GT-3b
RefseqXP_023156208.10.0trihelix transcription factor GT-3b
TrEMBLA0A1D6LGG10.0A0A1D6LGG1_MAIZE; Trihelix transcription factor GT-3b
TrEMBLA0A3L6EI050.0A0A3L6EI05_MAIZE; Trihelix transcription factor GT-3a
STRINGGRMZM2G016637_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125953134
Representative plantOGRP1431444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.18e-28Trihelix family protein