PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G016649_P03
Common NameLOC100279868
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Trihelix
Protein Properties Length: 774aa    MW: 83274.2 Da    PI: 6.1923
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G016649_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix96.72e-3094178187
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                        rW+++e++aLi++r+em+ ++r++ lk+plWe+vs+k+++ g++rs+k+Ckek+en++k+yk++keg+ +r++++s  +++f++lea
  GRMZM2G016649_P03  94 RWPREETQALIRIRSEMDATFRDATLKGPLWEDVSRKLADLGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFEELEA 178
                        8*********************************************************************866665..******985 PP
2trihelix107.58.7e-34516601187
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                        rW+k ev+aLi++r +++ r++++  k+plWe++s+ mr+ g++rs+k+Ckekwen+nk+ykk+ke++kkr +e+s+tcpyf+qlea
  GRMZM2G016649_P03 516 RWPKTEVHALIQLRMDLDMRYQETGPKGPLWEDISSGMRRLGYNRSSKRCKEKWENINKYYKKVKESNKKR-PEDSKTCPYFHQLEA 601
                        8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.53887151IPR017877Myb-like domain
SMARTSM007171.9E-491153IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-492151IPR009057Homeodomain-like
CDDcd122032.89E-3093158No hitNo description
PfamPF138376.0E-2293179No hitNo description
SMARTSM007170.0019513575IPR001005SANT/Myb domain
PfamPF138372.5E-23515602No hitNo description
PROSITE profilePS500907.236515573IPR017877Myb-like domain
CDDcd122032.70E-30516580No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 774 aa     Download sequence    Send to blast
MQQQHQGGGG GGGGGSQFGA PPPDMGPFSP TPAATGPMPL SSRPPSAQPQ QQPRTSYEEL  60
APMVPGAAAA SGFDDETMGS GGGGGGSSGA SSNRWPREET QALIRIRSEM DATFRDATLK  120
GPLWEDVSRK LADLGYKRSA KKCKEKFENV HKYYKRTKEG RAGRQDGKSY RFFEELEALH  180
AAAPQPPPQH LPAASTAPQL HALAAPVSPT PQQQLPASSA APPLHAFPAP VSAPPPLSSM  240
PLLTGPMQPA PISSAAPAPA PVDLLVAHQP LNLQGFSFSS MSDSESDDES EDDDMTAETG  300
GNQDRLGKRK RGDGGGSSSN KMMSFFEGLM QQVVDRQEEM QRRFLETMEK REAERTAREE  360
AWRRQEVARL NREQEQLAQE RAAAASRDAA IIAFLQRIGG QSVQPPATAV VVPMPAPVSV  420
HTTPPKQPSR QQQQPPPPSP QAGQATPQSK PISAAPLQQQ PPQQQPKDTS QQDAGTPRSL  480
PPASSQSLEL VPVAATEHHV DSGLGGGDGG AASSSRWPKT EVHALIQLRM DLDMRYQETG  540
PKGPLWEDIS SGMRRLGYNR SSKRCKEKWE NINKYYKKVK ESNKKRPEDS KTCPYFHQLE  600
AIYNRKHLRS LTTAATSSAA AAPRPAYPDQ LNPSRQEIEG KNINDDKRNN GGSGGGTQVP  660
TSNGETATTT TTTTLVAFDA DTGMKKPEDI VRELNEHPRR EFTTEDETDS DDMGDEYTDD  720
GEEGEDDGKM QYRIQFQRPN PGGTNTAPAP AAATTAAPAV PTSAPTSTFL AMVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136144KRSAKKCKE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.267810.0cell culture| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G016649
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G016649_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0550330.0BT055033.1 Zea mays full-length cDNA clone ZM_BFc0059A16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001344790.10.0uncharacterized LOC100279868 isoform 2
SwissprotQ391172e-73TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLB8A0E10.0B8A0E1_MAIZE; Uncharacterized protein
STRINGGRMZM2G016649_P030.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.11e-39GT-2-like 1