PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G017145_P05
Common NameZm.86044
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 70aa    MW: 7822.99 Da    PI: 10.9481
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G017145_P05genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.61.5e-053763127
                       CHHHHHHHHHHHHHHHHHHHHHHHCTS CS
                HLH  1 rrrahnerErrRRdriNsafeeLrell 27
                       +++ ++erE+r Rd+ N+ f eL  +l
  GRMZM2G017145_P05 37 KKVHKSEREKRKRDKQNDLFGELGNML 63
                       67889******************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.45E-52965IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
MVPRDRAHSA AAATAPPTEK PVQGPIQNNK CEKKAPKKVH KSEREKRKRD KQNDLFGELG  60
NMLGMRSVTN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.860442e-62embryo| endosperm| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G017145
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G017145_P05
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9622511e-102EU962251.1 Zea mays clone 241273 amelogenin precursor like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149147.16e-38uncharacterized protein LOC100282769
SwissprotQ69V102e-16BH062_ORYSJ; Transcription factor BHLH062
TrEMBLA0A1D6IKG71e-36A0A1D6IKG7_MAIZE; Amelogenin like protein
TrEMBLA0A3L6E3W61e-36A0A3L6E3W6_MAIZE; Transcription factor bHLH47
TrEMBLB6TB861e-36B6TB86_MAIZE; Amelogenin like protein
STRINGGRMZM2G017145_P022e-37(Zea mays)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Wu H,Ye H,Yao R,Zhang T,Xiong L
    OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.
    Plant Sci., 2015. 232: p. 1-12
    [PMID:25617318]