PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G017470_P01
Common NameLOC100275540
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Dof
Protein Properties Length: 413aa    MW: 42085.5 Da    PI: 9.0267
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G017470_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.61.3e-38115175262
             zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                        +e  lkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GG+lrnvPvGgg+r+nk+++
  GRMZM2G017470_P01 115 PEPGLKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGTLRNVPVGGGCRRNKRTK 175
                        56789*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-3899173IPR003851Zinc finger, Dof-type
PfamPF027012.4E-32119173IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.506119173IPR003851Zinc finger, Dof-type
PROSITE patternPS013610121157IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MVFSSVPVYL DPPNWNQHQH QPQHEQLQAH HGQLPSDAGG GGGGGVDVHA HHHQLPPMPP  60
SAPGGALMAP RRDMAAVVAA SGGSTSGGGG PTGGGSPIRP GSMTERARLA KIPQPEPGLK  120
CPRCESTNTK FCYFNNYSLS QPRHFCKTCR RYWTRGGTLR NVPVGGGCRR NKRTKSSKSN  180
SSSAASASSA GGTSSSTSST ATGGSGSAAS IMPPHQGHGG QPQFLASLHH PLVGGDHYST  240
GASRLGFPGL SSLDPMDYHQ FGAGAGGAIG LEQWRLPQIQ QFPFLSSRPD AVQPPMSGIY  300
PFEVEGHGGE GSGFAGHMLG DPKVSGSAGL ITQLASVKME DNPTSAAMAS SSPREFLGLP  360
RNLQLWGASG NGGASGNNGG GTGNAAGGGD TIPPGSSWVD LSGFNSSSSG NVL
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G017470
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00295DAPTransfer from AT2G37590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G017470_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0674170.0BT067417.1 Zea mays full-length cDNA clone ZM_BFc0042G08 mRNA, complete cds.
GenBankEU9565990.0EU956599.1 Zea mays clone 1567744 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001143068.10.0Dof zinc finger protein DOF3.6
RefseqXP_008669607.10.0dof zinc finger protein DOF3.6 isoform X1
TrEMBLB6SV340.0B6SV34_MAIZE; Dof zinc finger protein DOF3.6
TrEMBLK0DCL00.0K0DCL0_MAIZE; DOF27 transcription factor (Fragment)
STRINGGRMZM2G017470_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48932961
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.22e-43OBF-binding protein 3
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]