PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G018138_P01
Common NameLOC103634250
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 218aa    MW: 22964.5 Da    PI: 10.4159
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G018138_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.6e-192373256
                AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                       ++ GVr+++ +grWvAeI+d      +r r +lg+f+ta+eAa+a+++a+++l+ge
  GRMZM2G018138_P01 23 RFVGVRQRP-SGRWVAEIKD----SaQRVRLWLGTFDTADEAARAYDEAARALRGE 73
                       589******.7*********....4456**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-142373IPR001471AP2/ERF domain
PROSITE profilePS5103220.2052380IPR001471AP2/ERF domain
SMARTSM003801.3E-322386IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-272381IPR001471AP2/ERF domain
CDDcd000181.69E-272381No hitNo description
PRINTSPR003677.3E-82435IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-192481IPR016177DNA-binding domain
PRINTSPR003677.3E-84662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0009025anatomyvascular leaf
PO:0025142anatomyleaf tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0007101developmental stageLP.09 nine leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MATTQDSGRT ASATALTTSR GRRFVGVRQR PSGRWVAEIK DSAQRVRLWL GTFDTADEAA  60
RAYDEAARAL RGENTRTNFA DRARHGGPAG AGSGAARARL SKNLQHVMAR AAAAGRATAC  120
AGVGDQFALA AVFRHPVAAQ QQVKHAVQPS FVVPRRTEAP PLSSVPAGGG EVWRVDDVDT  180
ADESLCAAEE RSFKVSSSVI VPPSFSASSS ESFGLDDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1423791471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G018138
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G018138_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008654042.11e-154ethylene-responsive transcription factor 1
TrEMBLA0A1D6I9381e-153A0A1D6I938_MAIZE; Ethylene-responsive transcription factor RAP2-11
STRINGGRMZM2G018138_P011e-154(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124292634
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-18related to AP2 11