PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G018336_P01
Common NameABI33, ZEAMMB73_082033, Zm.144802
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 242aa    MW: 25699.1 Da    PI: 10.1641
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G018336_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.11.3e-3153148187
                        EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                        f+k+ tpsdv+k++rlv+pk++ae+h         gg + +++ l led  g++W+++++y+++s++yvltkGW++Fvk++gL++gD+v F+
  GRMZM2G018336_P01  53 FDKAVTPSDVGKLNRLVIPKQHAERHfplhlaaaaGGGESTGVLLNLEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLQAGDVVGFY 144
                        89*********************************7777899************************************************** PP

                        E-SS CS
                 B3  84 ldgr 87 
                        ++  
  GRMZM2G018336_P01 145 RSAA 148
                        7644 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.6E-3947168IPR015300DNA-binding pseudobarrel domain
CDDcd100174.09E-3051156No hitNo description
SuperFamilySSF1019366.54E-3051149IPR015300DNA-binding pseudobarrel domain
PfamPF023622.0E-2853155IPR003340B3 DNA binding domain
SMARTSM010192.1E-2253161IPR003340B3 DNA binding domain
PROSITE profilePS5086313.84653162IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MLRKHTYFDE LAQNKRAFAA AAAAASSAAA TTSTSLGNDN RSSSPACARE HLFDKAVTPS  60
DVGKLNRLVI PKQHAERHFP LHLAAAAGGG ESTGVLLNLE DAAGKVWRFR YSYWNSSQSY  120
VLTKGWSRFV KEKGLQAGDV VGFYRSAAGA DSKLFIDCKL RPNSVDTAST TSPVGSSPPP  180
APVAKAVRLF GVDLLTAPAD AMARCKRARD LASPPQAAIK KQLVELALAS VDQCYGAGRS  240
FS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-51491624114B3 domain-containing transcription factor NGA1
5os9_B3e-51491624114B3 domain-containing transcription factor NGA1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.847051e-161cell culture| ear| endosperm| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G018336
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G018336_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278840.0KJ727884.1 Zea mays clone pUT5977 ABI3VP1 transcription factor (ABI33) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020398136.11e-175AP2/ERF and B3 domain-containing protein Os01g0693400 isoform X1
SwissprotQ8RZX93e-99Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400
TrEMBLA0A1D6G2Q71e-174A0A1D6G2Q7_MAIZE; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A3L6DRN21e-174A0A3L6DRN2_MAIZE; AP2/ERF and B3 domain-containing protein
TrEMBLK7V0T71e-176K7V0T7_MAIZE; ABI3VP1 transcription factor (Fragment)
STRINGGRMZM2G018336_P011e-177(Zea mays)
STRINGGRMZM2G065538_P011e-177(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.16e-59RAV family protein