PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G018553_P02
Common Namepco133091
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 178aa    MW: 20379.2 Da    PI: 10.4098
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G018553_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.31e-51191491128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtd+elv +yL++k++g++l++  +i+evd+y+++PwdLp+++  + +ewyfF++rd+ky++g+r+nra+ +gyWkatg dk+v
  GRMZM2G018553_P02  19 LPPGFRFHPTDDELVEHYLCRKAAGQRLPV-PIIAEVDLYRFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRAAGDGYWKATGADKPV 109
                        79****************************.88***************8777899************************************* PP

                NAM  93 lsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +    + ++ g+kk Lvfy g+ap+g+ktdW+mheyrl
  GRMZM2G018553_P02 110 APRaaaaDARTLGIKKALVFYAGKAPRGVKTDWIMHEYRL 149
                        99888877888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.1E-5815154IPR003441NAC domain
PROSITE profilePS5100555.0319169IPR003441NAC domain
PfamPF023651.6E-2720149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MGQPVTRRRE RDAEAELDLP PGFRFHPTDD ELVEHYLCRK AAGQRLPVPI IAEVDLYRFD  60
PWDLPERALF GAREWYFFTP RDRKYPNGSR PNRAAGDGYW KATGADKPVA PRAAAADART  120
LGIKKALVFY AGKAPRGVKT DWIMHEYRLA DAGRRAKKGS LRVSFYTQKK ERAERGIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-9381494140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1376260.0endosperm| ovary| pericarp| pollen| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G018553
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and stamens. {ECO:0000269|PubMed:16924117}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that possesses transactivation activity (PubMed:16924117, PubMed:20632034). Transcription activator involved in response to abiotic stresses. Plays a positive role during dehydration and salt stress. Binds specifically to the 5'-CATGTG-3' motif found in promoters of stress-responsive genes (PubMed:16924117). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G018553_P02
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stresss, salt stress and cold stress (PubMed:16924117, PubMed:20632034). Induced by abscisic acid (ABA) (PubMed:16924117). Induced by methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0401670.0BT040167.1 Zea mays full-length cDNA clone ZM_BFc0068P23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340492.11e-106uncharacterized protein LOC100273092
SwissprotQ75HE56e-93NAC2_ORYSJ; NAC domain-containing protein 2
TrEMBLB4FSS91e-125B4FSS9_MAIZE; Uncharacterized protein
STRINGGRMZM2G018553_P011e-106(Zea mays)
STRINGGRMZM2G336533_P011e-105(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.17e-69NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  3. Chen Q,Wang Q,Xiong L,Lou Z
    A structural view of the conserved domain of rice stress-responsive NAC1.
    Protein Cell, 2011. 2(1): p. 55-63
    [PMID:21337010]