PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G018721_P01
Common NameLOC103631878
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 332aa    MW: 34764.7 Da    PI: 6.8988
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G018721_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1048.1e-33132189259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+
  GRMZM2G018721_P01 132 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSDDPSVVITTYEGQHCHH 189
                        8******************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-33116189IPR003657WRKY domain
SuperFamilySSF1182903.4E-28123189IPR003657WRKY domain
PROSITE profilePS5081129.976126191IPR003657WRKY domain
SMARTSM007748.6E-39131190IPR003657WRKY domain
PfamPF031064.7E-26132189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MAGAGGDWPF TADDDAYGAD SSAMFAELAA GCWAAAGGTA AEELMMSMLL PPPEDHHHQA  60
AVLATAPAAV SSRSSSTDDD DGAPAAAATT EAASKPPAAG KTTMTKSSSA GQKRARQPRF  120
AFMTKSDVDH LEDGYRWRKY GQKAVKNSPF PRSYYRCTNS KCTVKKRVER SSDDPSVVIT  180
TYEGQHCHHT AVACFPRANH AADGRHHLPF VEFSAASSAH HHYHSNPYSG TASCVNDHHL  240
PPLLPTTTTL APRHNALDNG QQELQAAMSM PVASVPTTSL LPPPTTALAA PPVASVSMTS  300
SSSLPPASSS AAPAAVDKGL LDDMVPPAMR HG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-25121188774Probable WRKY transcription factor 4
2lex_A2e-25121188774Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G018721
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00067PBMTransfer from AT1G69310Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G018721_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418592e-78AY341859.1 Oryza sativa (japonica cultivar-group) WRKY19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008651935.10.0probable WRKY transcription factor 48
TrEMBLA0A1D6HR990.0A0A1D6HR99_MAIZE; Putative WRKY transcription factor 57
STRINGGRMZM2G018721_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.21e-51WRKY DNA-binding protein 57