PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G020016_P01
Common NameLOC103630552, Zm.1164
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 210aa    MW: 21726.6 Da    PI: 10.9213
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G020016_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-1854104256
                AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                        +y+GVr ++ +gr++AeIrd +     r +r++lg+++t+ +Aa a+++a+ +l+g+
  GRMZM2G020016_P01  54 HYRGVRKRP-WGRYAAEIRDpW-----RkTRVWLGTYDTPVDAAMAYDRAAVALRGA 104
                        6********.**********88.....45*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.38E-2753112No hitNo description
PROSITE profilePS5103221.60154111IPR001471AP2/ERF domain
SMARTSM003803.3E-3254117IPR001471AP2/ERF domain
PfamPF008471.7E-1154103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-2954111IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-2154111IPR016177DNA-binding domain
PRINTSPR003671.9E-95566IPR001471AP2/ERF domain
PRINTSPR003671.9E-97793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MQQMEWDTRG GGGGGGGGGG GHGGAVGDGG PRGGGLTVGG VAVGVADQQR VEAHYRGVRK  60
RPWGRYAAEI RDPWRKTRVW LGTYDTPVDA AMAYDRAAVA LRGAKARTNF AAGRGSRATP  120
PVQARPLPYP ALAPGHFGVL DGARSSPWHV VYLPPPRLHH AVAPPMPLVA VAGDAASSLP  180
STALELRTGP KALPFDLNEP PSLLLGSRSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2054110562ATERF1
3gcc_A6e-2054110562ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G020016
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G020016_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0404200.0BT040420.1 Zea mays full-length cDNA clone ZM_BFc0090F19 mRNA, complete cds.
GenBankEU9735030.0EU973503.1 Zea mays clone 399837 mRNA sequence.
GenBankKJ7269420.0KJ726942.1 Zea mays clone pUT3488 AP2-EREBP transcription factor (EREB93) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008649825.11e-145ethylene-responsive transcription factor 12
TrEMBLA0A1D6M7D01e-143A0A1D6M7D0_MAIZE; Putative AP2/EREBP transcription factor superfamily protein
STRINGGRMZM2G020016_P011e-144(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.16e-24ERF domain protein 12