PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G020054_P01
Common NameEREB54, ZEAMMB73_775691
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 186aa    MW: 19908.3 Da    PI: 7.9248
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G020054_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-201969256
                AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56
                       + +GVr ++ +gr++AeIrd +     r +r++lg+f+t+e+Aa+a++aa+++l+g+
  GRMZM2G020054_P01 19 RLRGVRKRP-WGRYAAEIRDpV-----RkARVWLGTFDTPEQAARAYDAAARRLRGP 69
                       679******.**********44.....55**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.74E-171876No hitNo description
PfamPF008473.3E-141868IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-211977IPR016177DNA-binding domain
PROSITE profilePS5103223.3541976IPR001471AP2/ERF domain
SMARTSM003801.8E-311982IPR001471AP2/ERF domain
PRINTSPR003679.8E-102031IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-302176IPR001471AP2/ERF domain
PRINTSPR003679.8E-104258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0009025anatomyvascular leaf
PO:0009084anatomypericarp
PO:0001052developmental stagevascular leaf expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MAPKRSSEER AAAEQEQPRL RGVRKRPWGR YAAEIRDPVR KARVWLGTFD TPEQAARAYD  60
AAARRLRGPR ATTNYPGDVV REAPCTAPAL AASASGSTES SSSSSSRDDG HPPPPLPTAP  120
SSLGLGLGLF PATVATQPCL FLDPAPVERE EGERERSCCS RSPPSVLAGL GFDFDLNLPP  180
PAEMVM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-2016761172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1402070.0ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G020054
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G020054_P01
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282650.0KJ728265.1 Zea mays clone pUT6542 AP2-EREBP transcription factor (EREB54) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020401288.11e-129ethylene-responsive transcription factor ERF098
TrEMBLK7TL411e-128K7TL41_MAIZE; AP2-EREBP transcription factor
STRINGGRMZM2G020054_P011e-129(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118532537
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.12e-18ERF domain protein 11