PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G020254_P01
Common NameLOC103641154, ZEAMMB73_343636, Zm.32914
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 221aa    MW: 24678 Da    PI: 8.7121
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G020254_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.64.8e-32132187359
                        -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        Dgy+WrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve++  d++v ei+Y+geHnh 
  GRMZM2G020254_P01 132 DGYSWRKYGQKKVKGSEFPRSYYKCTHPSCPVKRKVETTP-DGQVAEIVYSGEHNHL 187
                        9***************************************.***************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-26125189IPR003657WRKY domain
PROSITE profilePS5081122.55125189IPR003657WRKY domain
SuperFamilySSF1182904.05E-24130188IPR003657WRKY domain
SMARTSM007747.5E-33130188IPR003657WRKY domain
PfamPF031065.3E-25132186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MSYCYGYKFM NCPLFSGSGK MQPHEKVAVL KPVASRPFSS FWPFPKFLHD FNATCSPTIT  60
FPQETELIRP KATRLASLPG DLPTQIAATT DAGSDTMSEE VEGYAKHHTY RDHATACQAA  120
RRNGERSRLS LDGYSWRKYG QKKVKGSEFP RSYYKCTHPS CPVKRKVETT PDGQVAEIVY  180
SGEHNHLKPG KPCPPRKPLL STSTDAVMCD THGIDDMTPP E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-161321891674WRKY transcription factor 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G020254
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G020254_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9521970.0EU952197.1 Zea mays clone 1219862 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008662746.11e-166probable WRKY transcription factor 3 isoform X1
TrEMBLK7TH291e-165K7TH29_MAIZE; Putative WRKY DNA-binding domain superfamily protein
STRINGGRMZM2G020254_P031e-152(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.23e-31WRKY family protein