PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G020254_P03
Common NameZEAMMB73_343636, Zm.32914
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 249aa    MW: 27557.2 Da    PI: 8.4822
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G020254_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.35.9e-32160215359
                        -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        Dgy+WrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve++  d++v ei+Y+geHnh 
  GRMZM2G020254_P03 160 DGYSWRKYGQKKVKGSEFPRSYYKCTHPSCPVKRKVETTP-DGQVAEIVYSGEHNHL 215
                        9***************************************.***************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-26153217IPR003657WRKY domain
PROSITE profilePS5081122.55153217IPR003657WRKY domain
SuperFamilySSF1182905.23E-24158216IPR003657WRKY domain
SMARTSM007747.5E-33158216IPR003657WRKY domain
PfamPF031066.6E-25160214IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MACGAWALAW VFSVLEQSLS QTRMGSRRMG SEPDLSLNAD HPLLGSGKMQ PHEKVAVLKP  60
VASRPFSSFW PFPKFLHDFN ATCSPTITFP QETELIRPKA TRLASLPGDL PTQIAATTDA  120
GSDTMSEEVE GYAKHHTYRD HATACQAARR NGERSRLSLD GYSWRKYGQK KVKGSEFPRS  180
YYKCTHPSCP VKRKVETTPD GQVAEIVYSG EHNHLKPGKP CPPRKPLLST STDAVMCDTH  240
GIDDMTPPE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-161602171674WRKY transcription factor 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G020254
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G020254_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9521970.0EU952197.1 Zea mays clone 1219862 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008662746.11e-152probable WRKY transcription factor 3 isoform X1
TrEMBLK7TH291e-151K7TH29_MAIZE; Putative WRKY DNA-binding domain superfamily protein
STRINGGRMZM2G020254_P030.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23252941
Representative plantOGRP1262735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.23e-31WRKY family protein