PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G021777_P01

Common Name

Zm.27242

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

CO-like

Protein Properties

Length: 335aa MW: 35391.5 Da PI: 4.8134

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G021777_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.5	1.1e-07	28	65	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 r C+ + ++++l+C+ ++ +lC+ C H g H GRMZM2G021777_P01 28 RPCDACAAEPARLHCRADGAFLCPGCDARAH-GagsrHA 65 68**************************999.4466675 PP
2	zf-B_box	22.9	1.7e-07	67	111	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 + C+ +e+ ++ C+ + lC+ C +H+ H++ p GRMZM2G021777_P01 67 VWLCEVCEHAPAAVTCRADAAALCAACDADIHSAnplarrHERLP 111 679*****************************6688888898877 PP
3	CCT	68.8	1.4e-23	257	300	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+l+RY+eKrk+R+F+K+irY+sRKa+Ae+RpR+KGrF+k+ GRMZM2G021777_P01 257 REARLMRYREKRKNRRFDKTIRYASRKAYAETRPRIKGRFAKRR 300 9****************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	5.2E-5	25	69	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.684	25	69	IPR000315	B-box-type zinc finger
Pfam	PF00643	8.3E-6	28	65	IPR000315	B-box-type zinc finger
CDD	cd00021	7.59E-7	28	69	No hit	No description
PROSITE profile	PS50119	10.424	65	112	IPR000315	B-box-type zinc finger
Pfam	PF00643	8.0E-6	67	112	IPR000315	B-box-type zinc finger
SMART	SM00336	4.6E-9	70	112	IPR000315	B-box-type zinc finger
Pfam	PF06203	1.3E-17	257	299	IPR010402	CCT domain
PROSITE profile	PS51017	16.916	257	299	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MDTAAELELG LELEQKPAAG YWSVVGARPC DACAAEPARL HCRADGAFLC PGCDARAHGA 60 GSRHARVWLC EVCEHAPAAV TCRADAAALC AACDADIHSA NPLARRHERL PVAPLFGALA 120 DAPQPFPSPA FAAAAGAEAP AQGEAVAEDY GSSEAEAASW LLPEPDNSHE DSAADTFFAE 180 SDAYLGADLD FARCMDGVKA IGVPVAPPEL DIGAGSFCYP EHSMNHILSS SSEVAVVPDA 240 QAAGLPVVVV VSRGEEREAR LMRYREKRKN RRFDKTIRYA SRKAYAETRP RIKGRFAKRR 300 SAEGEDEALE HEEGACFSPT GSAPAASDGV VPSFC

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.27242	0.0	endosperm\| meristem

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G021777

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G021777_P01

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU956239	0.0	EU956239.1 Zea mays clone 1559496 CONSTANS-like protein CO5 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001147679.2	0.0	Col3 transcription factor
TrEMBL	A0A1D6HCU0	0.0	A0A1D6HCU0_MAIZE; CONSTANS-like protein CO5
STRING	GRMZM2G021777_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2191	32	72
Representative plant	OGRP691	17	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24790.1	1e-39	CONSTANS-like 3

Link Out ? help Back to Top
Phytozome	GRMZM2G021777_P01