PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G022499_P01
Common NameZm.38186
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 668aa    MW: 70134 Da    PI: 9.7171
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G022499_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.58.2e-102372445
                       S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHH CS
    Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwq 45
                       W t+E++ll++av+++G+ +W+++a +m           +t+  c++r++
  GRMZM2G022499_P01 23 WGTWEELLLACAVRKHGTASWDSVAMEMLsrcppaaaDSLTPAGCRLRYR 72
                       ****************************9888888887788888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.4E-41977IPR001005SANT/Myb domain
CDDcd001674.49E-52355No hitNo description
PfamPF002491.3E-82372IPR001005SANT/Myb domain
Gene3DG3DSA:1.20.920.103.1E-12294426IPR001487Bromodomain
SMARTSM002972.9E-4322427IPR001487Bromodomain
PROSITE profilePS5001410.346329408IPR001487Bromodomain
PfamPF004398.1E-9353411IPR001487Bromodomain
SuperFamilySSF473702.88E-12354424IPR001487Bromodomain
CDDcd043695.55E-11360422No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MTARSDDPGV SPGTSAAAGG EIWGTWEELL LACAVRKHGT ASWDSVAMEM LSRCPPAAAD  60
SLTPAGCRLR YRLLHRRFTA AAAVNGDEEP DAASADCCVE ELRKLRVAEL RREVERYDLS  120
IGSLQSRVER LKEERARSIS GEANPVPAVK EDGEEEPAEG RKESLEEEGD DAGGGEEDRV  180
SGGESGRSCK ESNSSDLKRP RPARDAGDGD AAARREDEGA GDAARESSAV KREQVSGESV  240
VGSKDTVAAA DTEKESSDVQ SSASPSRRRE REIGAGEDAD VASAPPPPAP AAAVLPAAEA  300
EALRAFLEVV RTSKPGSVFE RRLESQDIFS FPLCRFFRCS TDRWAQKCRS QDDAKYRCTI  360
RRHVDLETVR SRLDGGSGSY ASATEFYRDL LLLCANALVF YPRGSPERSA AARTRALVAK  420
HMSKDQPGPS GKAVAGPAAS KKAKAEADVG SLLEKTAPII VCRKRSSIAK AAAAATAKEE  480
RSEKAESDKE GEKQQEAVGK RKAAAAAKDR AAWGPRTNKT RGGPAVRKAS AQSHKGASAA  540
ADNGSDSDAP PEEAKKQPAA DKKGGGGGGV AKKRNAVNFL NRMKQGGSAP STERVSLLET  600
LKLSAAAEQK KAGKGEGKEP AGGSGSKKAT PGRRNVGRPP KRAAAPPSPP PSKRAKGGGG  660
GGKRGGRK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197201KRPRP
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G022499
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G022499_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0856040.0BT085604.1 Zea mays full-length cDNA clone ZM_BFc0038F08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001353859.10.0uncharacterized protein LOC100501552
TrEMBLA0A1D6KIX20.0A0A1D6KIX2_MAIZE; DNA-binding bromodomain-containing protein
STRINGGRMZM2G022499_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Representative plantOGRP38051123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.16e-18DNA-binding bromodomain-containing protein