PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G023119_P01
Common NameZm.128485
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Trihelix
Protein Properties Length: 157aa    MW: 17664.4 Da    PI: 10.5695
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G023119_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix34.94e-111888164
           trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykki 64
                       +W++ e  aL++a  ++  +l+rg+l++p+W+ev++++       ++r + r+ +qCk++ + l+k+yk +
  GRMZM2G023119_P01 18 CWSEGEKVALVDAWGSRYLDLNRGSLRQPQWREVADAVnsrpgasARRCLPRTDIQCKNRVDTLKKKYKVE 88
                       7*******************************************999999******************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-181691No hitNo description
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0009025anatomyvascular leaf
PO:0020142anatomystem internode
PO:0025142anatomyleaf tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MDGKLPPPNP NLAYWEDCWS EGEKVALVDA WGSRYLDLNR GSLRQPQWRE VADAVNSRPG  60
ASARRCLPRT DIQCKNRVDT LKKKYKVECA RRAIVVELLQ PVRPPRRAHA HRHQEVVPTA  120
RRAACVLEGA LVQRSSIVAV VNLFIVAFFV TASARGQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1284850.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G023119
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G023119_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9603050.0EU960305.1 Zea mays clone 223391 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008675215.14e-44trihelix transcription factor ASIL2
RefseqXP_025817606.15e-44trihelix transcription factor ASIL2-like isoform X1
SwissprotQ9LJG83e-23ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLB6T5P02e-68B6T5P0_MAIZE; Uncharacterized protein
STRINGGRMZM2G023119_P023e-59(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.13e-28sequence-specific DNA binding transcription factors