PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G023119_P02
Common NameZm.128485
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Trihelix
Protein Properties Length: 210aa    MW: 23061.9 Da    PI: 10.5968
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G023119_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix34.65e-111890166
           trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkike 66
                       +W++ e  aL++a  ++  +l+rg+l++p+W+ev++++       ++r + r+ +qCk++ + l+k+yk +  
  GRMZM2G023119_P02 18 CWSEGEKVALVDAWGSRYLDLNRGSLRQPQWREVADAVnsrpgasARRCLPRTDIQCKNRVDTLKKKYKVEWP 90
                       7*******************************************999999******************97644 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.9E-181690No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MDGKLPPPNP NLAYWEDCWS EGEKVALVDA WGSRYLDLNR GSLRQPQWRE VADAVNSRPG  60
ASARRCLPRT DIQCKNRVDT LKKKYKVEWP RSRTGMSSPT SRGSQGMGGQ CTASTTVDRL  120
PLSASGDGAM DFIGFHATPT LVIQATRLAE DLFERASNGS GKCLTSRVTH AALPVFRRGR  180
RPRGVWGRRG EGRGHKMDGP GSSHRTDGPD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1284851e-148meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G023119
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G023119_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9603051e-145EU960305.1 Zea mays clone 223391 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D6KC501e-152A0A1D6KC50_MAIZE; Sequence-specific DNA binding transcription factor
STRINGGRMZM2G023119_P021e-153(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.12e-27sequence-specific DNA binding transcription factors