PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G023557_P01
Common NameMYBR104, Zm.121677
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 129aa    MW: 14623.5 Da    PI: 9.6266
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G023557_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.62.9e-08247345
                       SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                       +W+ +E  ++ +a + +  +   +W ++a+ +g gRt+ ++  +++
  GRMZM2G023557_P01  2 SWSSDENHRFEQALADYDEDtpgRWQLVAQAVGGGRTADDVWRHYL 47
                       7*****************99*********************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.576154IPR017884SANT domain
PfamPF002492.2E-6147IPR001005SANT/Myb domain
SuperFamilySSF466893.25E-10252IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.5E-4354IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MSWSSDENHR FEQALADYDE DTPGRWQLVA QAVGGGRTAD DVWRHYLHLE GDIDDMGARE  60
RANRRRQQYR RNAQQHQHQH GASANANAYA SRNHISRRSN GGGASSSNTN NISSHRATNS  120
NDRAKRPQE
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G023557
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G023557_P01
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283100.0KJ728310.1 Zea mays clone pUT6590 MYB-related transcription factor (MYBR104) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001143360.16e-88uncharacterized protein LOC100275986
TrEMBLA0A060CZ324e-88A0A060CZ32_MAIZE; MYB-related transcription factor (Fragment)
STRINGGRMZM2G023557_P016e-89(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.13e-15RAD-like 1