PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G024468_P01
Common NameLOC100193481, MYB83
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 296aa    MW: 32034.3 Da    PI: 8.2829
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G024468_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.2e-161461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+W++eEd+llv +v+++G+g+W++++   g+ R+ k+c++rw +yl
  GRMZM2G024468_P01 14 KGPWSPEEDLLLVSYVQEHGPGNWRAVPCSTGLMRCSKSCRLRWTNYL 61
                       79********************************************97 PP
2Myb_DNA-binding491.4e-1567112148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg+++ +E++l++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  GRMZM2G024468_P01  67 RGSFSDQEEKLIIHLQELLGNK-WSAIASYLP-ERTDNDIKNYWNTHL 112
                        899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416.968961IPR017930Myb domain
SuperFamilySSF466896.97E-3011108IPR009057Homeodomain-like
SMARTSM007177.4E-121363IPR001005SANT/Myb domain
PfamPF002499.7E-161461IPR001005SANT/Myb domain
CDDcd001671.12E-101661No hitNo description
PROSITE profilePS5129424.38762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2465116IPR009057Homeodomain-like
SMARTSM007171.6E-1566114IPR001005SANT/Myb domain
PfamPF002499.1E-1567112IPR001005SANT/Myb domain
CDDcd001671.32E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGRPPCCEKA GLKKGPWSPE EDLLLVSYVQ EHGPGNWRAV PCSTGLMRCS KSCRLRWTNY  60
LRPGIKRGSF SDQEEKLIIH LQELLGNKWS AIASYLPERT DNDIKNYWNT HLKKKLAKTG  120
ARESGASAKT TKKSDRAAAP KGQWERRLQT NIHTARQALR EALSMDDTAP PAIKPEPLPL  180
PLGQLPAPAS QAMYASSIDN IARLLEGWMR PSVSGNASAE SMSSFSAFSG GGDGASASHI  240
GTAHTPEGFT GTRKEEGAGP GPASLPMFEN WLLDDGMGNG DASLICVPLA DPCEFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-25121162105MYB PROTO-ONCOGENE PROTEIN
1h8a_C5e-251211625128MYB TRANSFORMING PROTEIN
1mse_C4e-25121162105C-Myb DNA-Binding Domain
1msf_C4e-25121162105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.305210.0endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G024468
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G024468_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0357490.0BT035749.2 Zea mays full-length cDNA clone ZM_BFb0081I17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001132068.20.0uncharacterized protein LOC100193481
SwissprotP813926e-95MYB06_ANTMA; Myb-related protein 306
TrEMBLB4FF610.0B4FF61_MAIZE; MYB transcription factor
STRINGGRMZM2G024468_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.24e-89myb domain protein 96
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]