PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G024655_P01
Common NameC3H42, LOC103634705, ZEAMMB73_397300, Zm.32970
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 166aa    MW: 18003.3 Da    PI: 8.477
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G024655_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.36.1e-096587527
                       --SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                       +C++f rtG CkyGd+C++ H++
  GRMZM2G024655_P01 65 ICHHFVRTGACKYGDSCRYFHPK 87
                       7********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004511.7E-5338IPR003604Zinc finger, U1-type
SuperFamilySSF576673.26E-16448No hitNo description
PfamPF062207.6E-11537IPR013085Zinc finger, U1-C type
PROSITE profilePS5010314.7566088IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-46287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-76488IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-56585IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-76587IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MPLGKYYCDY CDKQFQDTPA ARKRHLQGVQ HQRARALWYD SIRHQDQHGG ASSLLLPDGT  60
LAKGICHHFV RTGACKYGDS CRYFHPKPNG VNPALAAPGL GSGPAPMVQQ SDIIGNQPNF  120
VVYQGVDINS SSGKILGGHA SWGNLPPSLQ PPPEGGYPPL PFIDWG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.329700.0shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G024655
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G024655_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279920.0KJ727992.1 Zea mays clone pUT6112 C3H transcription factor (C3H42) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340157.11e-120zinc finger CCCH domain-containing protein 3
SwissprotQ0JP111e-73C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLK7VP351e-119K7VP35_MAIZE; C2H2 and C2HC zinc fingers superfamily protein
STRINGGRMZM2G024655_P011e-120(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126172326
Representative plantOGRP85391213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.12e-28C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]