PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G024948_P01
Common NameLOC100502511
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 422aa    MW: 44969.9 Da    PI: 7.9286
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G024948_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B395.24.6e-30101193189
                        EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                        f+kv tpsdv+k++rlv+pk++ae++       +e++  l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L +gD+v F++   +
  GRMZM2G024948_P01 101 FDKVVTPSDVGKLNRLVIPKQYAEKYfpldAAANEKGLLLSFEDSAGKHWRFRYSYWNSSQSYVMTKGWSRFVKEKRLVAGDTVSFSRAAAE 192
                        89***************************955556888*************************************************66433 PP

                        E CS
                 B3  89 e 89 
                        +
  GRMZM2G024948_P01 193 D 193
                        3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.6E-4193205IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-2998207IPR015300DNA-binding pseudobarrel domain
CDDcd100171.96E-2599188No hitNo description
PROSITE profilePS5086314.663101204IPR003340B3 DNA binding domain
SMARTSM010192.8E-20101206IPR003340B3 DNA binding domain
PfamPF023622.6E-27101201IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006340anatomyadult vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009066anatomyanther
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MDQFAASGRF SREEEADEEQ EDASNSMREI SFMPPAAASS SSAAASASAS ASTSASACAS  60
GSSSAPFRSA SASGDAAGAS GSGGPADADA EAEAVEKEHM FDKVVTPSDV GKLNRLVIPK  120
QYAEKYFPLD AAANEKGLLL SFEDSAGKHW RFRYSYWNSS QSYVMTKGWS RFVKEKRLVA  180
GDTVSFSRAA AEDARHRLFI DWKRRVDTRG PLRFSGLALP MPLPSSHYGG PHHYSPWGFG  240
GGGGGGGGFF MPPSPPATLY EHRLRQGLDF RSMTTTYPAP TVGRQLLFFG SARMPPHHAP  300
PPQPRPFSLP LHHYTVQPSA AGVTAASRPV LLDSVPVIES PTTAAKRVRL FGVNLDNNPD  360
GGGEASHQGD ALSLQMPGWQ QRTPTLRLLE LPRHGGESSA ASSPSSSSSS KREARSALDL  420
DL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-57962053113B3 domain-containing transcription factor NGA1
5os9_B1e-57962053113B3 domain-containing transcription factor NGA1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G024948
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G024948_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0884010.0BT088401.1 Zea mays full-length cDNA clone ZM_BFc0175G08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001183918.10.0uncharacterized protein LOC100502511
SwissprotQ6EU301e-144Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLC4JC540.0C4JC54_MAIZE; B3 domain-containing transcription factor NGA2
STRINGGRMZM2G024948_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.13e-56B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]