PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G025685_P01
Common NameZm.79780
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HSF
Protein Properties Length: 187aa    MW: 22245.3 Da    PI: 10.9439
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G025685_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.38.1e-36271192103
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y++++d+ +++++sw ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg k+l
  GRMZM2G025685_P01  27 FLTKTYQLVDDPCTDHIVSWGDDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFRKGAKHL 109
                        9****************************************************************999.........*************** PP

                        XXXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkkse 103
                        l +i+r+ks+
  GRMZM2G025685_P01 110 LAEIHRRKSS 119
                        *******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-3719110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.0E-5823116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.99E-3424116IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-3127116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-202750IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-207890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006340anatomyadult vascular leaf
PO:0008018anatomytransition vascular leaf
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MAFLVERCGE MVVSMESPHA KPVPAPFLTK TYQLVDDPCT DHIVSWGDDD TTFVVWRPPE  60
FARDLLPNYF KHNNFSSFVR QLNTYGFRKI VADRWEFANE FFRKGAKHLL AEIHRRKSSQ  120
PLPTPLPPHQ PYHHHLHHLH HHLSPFSPPP LAQPVPSYHH HHFPRRAHRH RHRAARRCSS  180
RRRRRQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-222311917123Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.797800.0ear| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G025685
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G025685_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0541480.0BT054148.1 Zea mays full-length cDNA clone ZM_BFb0133K13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001144365.21e-118uncharacterized protein LOC100277279
SwissprotQ7XHZ01e-79HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBLB7ZXV61e-117B7ZXV6_MAIZE; Heat stress transcription factor B-4
STRINGGRMZM2G025685_P011e-135(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.19e-65heat shock transcription factor B4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]