PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G026157_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-YA
Protein Properties Length: 111aa    MW: 13113.2 Da    PI: 12.0398
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G026157_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA73.93.4e-233088158
          CBFB_NFYA  1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAl.rRpRgsgGrF 58
                       +ep+YVNaKQy++Il+RRq+Rak+e e+k  +k+  ++    Rh+hA+ rR+Rg+gGrF
  GRMZM2G026157_P01 30 EEPVYVNAKQYRGILRRRQSRAKAELERKRWSKQESRIFTSPRHQHAMtRRARGNGGRF 88
                       69***************************99****************96789******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.2E-212891IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115222.9852991IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.6E-183188IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.3E-123254IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068603454IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.3E-126588IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
SISISCSIAV LRPLLRRRCC SLWKSRCVSE EPVYVNAKQY RGILRRRQSR AKAELERKRW  60
SKQESRIFTS PRHQHAMTRR ARGNGGRFLN TKKSDRVPPD DLIQLRRHNE A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-143095265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G026157
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in inflorescence, stems, flowers and siliques. {ECO:0000269|PubMed:11867211}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G026157_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6825540.0KJ682554.1 Zea mays isolate GRMZM2G026157_T01 drought-responsive lncRNA, complete sequence.
GenBankKJ7318670.0KJ731867.1 Zea mays isolate TCONS_00052155 drought responsive lncRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149098.18e-27uncharacterized protein LOC100282719
RefseqXP_008676720.16e-27uncharacterized protein LOC100282719 isoform X1
RefseqXP_020407263.16e-27uncharacterized protein LOC100282719 isoform X1
SwissprotQ84JP12e-15NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
SwissprotQ945M93e-15NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBLA0A1D6GK513e-36A0A1D6GK51_MAIZE; Uncharacterized protein
STRINGGRMZM2G026157_P011e-75(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.14e-18nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]