PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G028151_P02
Common NameLOC100217129
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 260aa    MW: 27553.9 Da    PI: 9.7182
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G028151_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.79e-162576155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       s y+GV+++++ grW A+I  +s    +k  +lg+f t eeAa+a++ a+ k++g
  GRMZM2G028151_P02 25 SIYRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 76
                       57****************999754...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.48E-182585IPR016177DNA-binding domain
CDDcd000187.45E-252586No hitNo description
PfamPF008474.6E-112576IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-192684IPR001471AP2/ERF domain
SMARTSM003802.9E-342690IPR001471AP2/ERF domain
PROSITE profilePS5103219.0452684IPR001471AP2/ERF domain
PRINTSPR003677.4E-52738IPR001471AP2/ERF domain
PRINTSPR003677.4E-56686IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MKNMTRQEYV AHLRRKSSGF SRGASIYRGV TRHHQHGRWQ ARIGRVSGNK DLYLGTFSTQ  60
EEAAEAYDVA AIKFRGLSAV TNFDITRYDV DKIMESSTLL PGEQVRRRKE GADAAVSEAA  120
AALVQAGNCM TDTWKIQAAL PAAARADERG AGQQQRQDLL SSEAFSLLHD IVSVDAAAGT  180
GTGGMSNASS SLAPSVSNSR EQSPDRGGAS LAMLFAKPAA APKLACPLPL GSWVSPSAVS  240
ARPPGVSIAH LPVFAAWTDA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.321980.0meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G028151
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed at the base of the stem. Expressed in stems. Expressed a low levels in crown roots and seeds (PubMed:21807632). Expressed in the stem region where adventitious (crown) root initiation occurs (PubMed:21481033). {ECO:0000269|PubMed:21481033, ECO:0000269|PubMed:21807632}.
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G028151_P02
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0379830.0BT037983.1 Zea mays full-length cDNA clone ZM_BFb0205J05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001346556.10.0uncharacterized protein LOC100217129
RefseqXP_008665715.10.0putative AP2/EREBP transcription factor superfamily protein isoform X2
SwissprotQ84Z029e-99CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLB4FLJ50.0B4FLJ5_MAIZE; Uncharacterized protein
STRINGGRMZM2G028151_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-63AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]