PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G029292_P03
Common NameZEAMMB73_508453, Zm.33467
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 242aa    MW: 27416.6 Da    PI: 5.9791
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G029292_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.29.2e-2553113258
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnh 58 
                        +Dgy+WrKYGqK+++gs++pr YYrCt++   gCp++k+ve++ ++dp ++ ++Y++eH++
  GRMZM2G029292_P03  53 HDGYQWRKYGQKMIRGSTYPRCYYRCTYHqdhGCPATKHVEQNnSQDPPLFRVIYTNEHTC 113
                        7***************************98999*******986268*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.7E-2537114IPR003657WRKY domain
SuperFamilySSF1182904.05E-2246113IPR003657WRKY domain
SMARTSM007742.8E-3552115IPR003657WRKY domain
PfamPF031065.7E-2554113IPR003657WRKY domain
PROSITE profilePS5081120.35754111IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MAKRGDYMDS SCDCSNGRTP KRLVQDCSSY AQAHAKKKVR ISTRTEYTYA PYHDGYQWRK  60
YGQKMIRGST YPRCYYRCTY HQDHGCPATK HVEQNNSQDP PLFRVIYTNE HTCCSTHVSD  120
YMASSIYIQQ IADASLREAE VEIPSQLAQC FGGHELIEEE NDAIISSLLT AISGCDVATL  180
DGGQHAAIEE NTPARMPRSR IEASPSISPV LLHASSDKLK TDFIEPLETQ WFELLDLGWF  240
IE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-1340111269WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.334670.0embryo| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G029292
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G029292_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9566700.0EU956670.1 Zea mays clone 1570252 WRKY22 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147816.11e-178WRKY22 - superfamily of TFs having WRKY and zinc finger domains
TrEMBLB6SVA51e-177B6SVA5_MAIZE; WRKY22-superfamily of TFs having WRKY and zinc finger domains
STRINGGRMZM2G029292_P030.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118143139
Representative plantOGRP1534434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.19e-20WRKY DNA-binding protein 38