PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G030272_P01
Common NameLOC100280812, Zm.125169
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 214aa    MW: 23275.7 Da    PI: 8.9124
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G030272_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY67.12.8e-213091259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
               WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59
                       +Dg++WrKYG K++++++fpr YYrCt++   +Cp++k+v+++ ++dp +  +tY ++H ++
  GRMZM2G030272_P01 30 NDGHQWRKYGEKKINNTNFPRYYYRCTYKdnmNCPATKQVQQKdHSDPPLYAVTYYNDHSCN 91
                       8***************************99999*******8752679************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-231691IPR003657WRKY domain
SuperFamilySSF1182902.75E-222391IPR003657WRKY domain
PROSITE profilePS5081116.2832493IPR003657WRKY domain
SMARTSM007749.9E-312992IPR003657WRKY domain
PfamPF031061.0E-243090IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MSPAPSSHHS QINSRKEKRM RKVDTFAPHN DGHQWRKYGE KKINNTNFPR YYYRCTYKDN  60
MNCPATKQVQ QKDHSDPPLY AVTYYNDHSC NSAFLPLSPS EFQLQTSSGK AVSICFDSSS  120
GTAAAAAATT NASGGSPSSS AAAAAARRGT PPEVSNPPVL RRSETYPWGA GAVEQKPASC  180
STEYHDAFSA GAAAVPEEVV DAGRFGSIRF FHFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-143090968OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1251690.0meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G030272
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G030272_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9539540.0EU953954.1 Zea mays clone 1450347 WRKY55 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147204.11e-160WRKY55 - superfamily of TFs having WRKY and zinc finger domains
TrEMBLB6SMI91e-158B6SMI9_MAIZE; WRKY55-superfamily of TFs having WRKY and zinc finger domains
STRINGGRMZM2G030272_P011e-159(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP203235100
Representative plantOGRP1411644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.14e-19WRKY DNA-binding protein 46
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]