PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G032258_P01
Common Namepco075454
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 365aa    MW: 41666.7 Da    PI: 5.0149
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G032258_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32e-0692115226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        k  lC ff + G+C+ G +CkF+H+
  GRMZM2G032258_P01  92 KSILCEFFKA-GQCQKGFKCKFSHD 115
                        6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.7E-590116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.27290117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-690115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-492116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.793160198IPR000571Zinc finger, CCCH-type
SMARTSM003564.5160197IPR000571Zinc finger, CCCH-type
PfamPF165438.3E-16217301IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MPPKKAAPSK AELAKKQKVV EDKTFGLKNK NKSKNVQKYV QSLHQAVQPK PDSTKTAAKK  60
KKEEEKAREK ELNDLFKVAV SQPKVPVGVD PKSILCEFFK AGQCQKGFKC KFSHDLNVQR  120
KGEKIDIYTD KRDAETMEDW DQETLEKVVE SKKMEYQQNK PTDIVCKYFL DAVEKKQYGW  180
FWVCPNGGKE CHYRHALPPG YVLKSQMKAL LEEESEKIAI EDEIEDQRKK TKTTTPMTTE  240
LFMEWKRRKA EEREAGQAAL KAERAKNDRM SGRELFMADA SVFVDDAEAY EVYEREESEA  300
NEESTNKSQN PGPSSSTSNG KEVEEPDDDD IDVDDDLDID ELNELEASLS RTSIQIREPG  360
EGTSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227248RKKTKTTTPMTTELFMEWKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.55440.0ear| embryo| endosperm| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G032258
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G032258_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9628980.0EU962898.1 Zea mays clone 246367 nucleic acid binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149321.10.0uncharacterized protein LOC100282944
SwissprotQ0JHZ20.0C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLA0A3L6FE190.0A0A3L6FE19_MAIZE; Zinc finger CCCH domain-containing protein 11
TrEMBLB6TD330.0B6TD33_MAIZE; Nucleic acid binding protein
STRINGGRMZM2G032258_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88592027
Representative plantOGRP464966
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-141C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]