PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G034113_P01
Common NameHB126, LOC100193808
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HD-ZIP
Protein Properties Length: 244aa    MW: 26792.7 Da    PI: 5.2167
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G034113_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.11.8e-192882256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                       +++ +f++eq++ Le++F+ + ++  +++ +LA++lgL+ rqV +WFqN+Ra++k
  GRMZM2G034113_P01 28 KNKKRFSDEQTKSLESMFATQAKLEPRQKLQLARELGLQPRQVAIWFQNKRARWK 82
                       67789*************************************************9 PP
2HD-ZIP_I/II1171.1e-3729120293
        HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                        +k+r+s+eq k+LE++F ++ kLep++K +lareLglqprqva+WFqn+RAR+k+kqlE++y+aL++ y al  + e+L++e+++L ++l++
  GRMZM2G034113_P01  29 NKKRFSDEQTKSLESMFATQAKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYHALLCSYESLKDEKRALLKQLEK 120
                        79*************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-191785IPR009057Homeodomain-like
SuperFamilySSF466895.99E-192186IPR009057Homeodomain-like
PROSITE profilePS5007117.1512484IPR001356Homeobox domain
SMARTSM003899.6E-172788IPR001356Homeobox domain
CDDcd000861.06E-172885No hitNo description
PfamPF000468.7E-172882IPR001356Homeobox domain
PRINTSPR000318.0E-65564IPR000047Helix-turn-helix motif
PROSITE patternPS0002705982IPR017970Homeobox, conserved site
PRINTSPR000318.0E-66480IPR000047Helix-turn-helix motif
PfamPF021836.1E-1284125IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDGAEDDGTE WMMHGAGGKG KGGGALDKNK KRFSDEQTKS LESMFATQAK LEPRQKLQLA  60
RELGLQPRQV AIWFQNKRAR WKSKQLEREY SALRDDYHAL LCSYESLKDE KRALLKQLEK  120
LAEMLHEPPQ GKYYGGNADD VRSGGVGGTK EEEESTDACA GAALYSSECA GGGRFIAHFL  180
ADDDVGAALF RPPSSPQPTA GLLTSSGPPE HQPFQFHSGC CWPSSSAEQT CSGSQWWELE  240
SLSE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11623GGKGKGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.350100.0glume
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G034113
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G034113_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0411140.0BT041114.1 Zea mays full-length cDNA clone ZM_BFc0176L16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149510.21e-180uncharacterized protein LOC100193808
SwissprotQ651Z52e-85HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6
SwissprotQ9XH352e-85HOX6_ORYSI; Homeobox-leucine zipper protein HOX6
TrEMBLB4FVH61e-179B4FVH6_MAIZE; HB transcription factor
STRINGGRMZM2G034113_P011e-180(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78733448
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.16e-41homeobox 7
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]