PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G034563_P01
Common Nameumc1321
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 248aa    MW: 26111.3 Da    PI: 7.504
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G034563_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.26.9e-32123176255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        pr+rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  GRMZM2G034563_P01 123 PRMRWTTALHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 176
                        9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.3E-29120176IPR009057Homeodomain-like
SuperFamilySSF466891.02E-15120176IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-23123176IPR006447Myb domain, plants
PfamPF002491.6E-7124175IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MSGTTGGVVG VQTTAAAVPD LSLHISPPSP PPAGGVEALP EPRLLLGLGL GPGPGLELDD  60
DDDAVATKKV DDDDDAAAAA REHNLHAQRL RLQLHQPSQT AHGFKKSSSG TAAGGGRRSS  120
RAPRMRWTTA LHAHFVHAVE LLGGHERATP KSVLELMNVK DLTLAHVKSH LQMYRTVKGS  180
TDRSCVAAAG HGGHAGDMVL LRRRGAGEGD GGYYDVPICN KNPVNTTVDP TFFNNNNSNI  240
TDRFALLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-17124178357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-17124178357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-17124178357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-17124178357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.123020.0ear| meristem| ovary| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G034563
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G034563_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9684680.0EU968468.1 Zea mays clone 321144 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001144444.10.0uncharacterized LOC100277405
TrEMBLB6TU031e-180B6TU03_MAIZE; Uncharacterized protein
STRINGGRMZM2G034563_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37423168
Representative plantOGRP5701580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.22e-32G2-like family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]