PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G034840_P01
Common NameARF4
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 935aa    MW: 102873 Da    PI: 6.1207
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G034840_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.44.9e-22144244199
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        f+k lt sd++++g +++p++ ae+       ++++++ ++l+++d++ + W++++i  ++++r++lt+GW+ Fv a++Lk+gD+v+F   +
  GRMZM2G034840_P01 144 FCKNLTASDTSTHGGFSVPRRAAEKLfpqldySMQPPN-QELIVRDLHDNMWTFRHI-YRQPKRHLLTTGWSLFVGAKRLKAGDSVLFI--R 231
                        89*********************999*****9555555.49***************7.5667799************************..4 PP

                        SSEE..EEEEE-S CS
                 B3  87 rsefelvvkvfrk 99 
                        +++ +l+v+v+r+
  GRMZM2G034840_P01 232 DEKSQLLVGVRRA 244
                        577778*****97 PP
2Auxin_resp109.53.5e-36269351183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaas++  F+v+YnPr+s+s Fv+++++++ a++ + svGmRf m+fete+ss+rr++Gt+vg+sd++p+rWpnSkWr+L+
  GRMZM2G034840_P01 269 AAHAASSGGSFTVYYNPRTSPSPFVIPLARYNMATYLQPSVGMRFAMMFETEESSKRRCTGTIVGISDYEPMRWPNSKWRNLQ 351
                        79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.79E-42134272IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.8E-39137257IPR015300DNA-binding pseudobarrel domain
CDDcd100171.81E-19143243No hitNo description
PROSITE profilePS5086312.901144245IPR003340B3 DNA binding domain
PfamPF023621.5E-19144244IPR003340B3 DNA binding domain
SMARTSM010191.0E-20144245IPR003340B3 DNA binding domain
PfamPF065073.3E-32269351IPR010525Auxin response factor
PROSITE profilePS5174523.2832916IPR000270PB1 domain
PfamPF023091.5E-8843919IPR033389AUX/IAA domain
SuperFamilySSF542774.84E-8851911No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0009942Biological Processlongitudinal axis specification
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0048507Biological Processmeristem development
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0042802Molecular Functionidentical protein binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 935 aa     Download sequence    Send to blast
MMTSSYEKAT SGVLRNAAAL LDEMQLMGET QGAKKVINSE LWHACAGPLV CLPQRGSLVY  60
YFPQGHSEQV AATTKKIPNS RIPNYPSLPS QLLCQVHNIT LHADKETDEI YAQMTLQPVH  120
SETDVFPIPT LGAYTKSKHP SEYFCKNLTA SDTSTHGGFS VPRRAAEKLF PQLDYSMQPP  180
NQELIVRDLH DNMWTFRHIY RQPKRHLLTT GWSLFVGAKR LKAGDSVLFI RDEKSQLLVG  240
VRRATRQQPA LSSSVLSTDS MHIGVLAAAA HAASSGGSFT VYYNPRTSPS PFVIPLARYN  300
MATYLQPSVG MRFAMMFETE ESSKRRCTGT IVGISDYEPM RWPNSKWRNL QVEWDEHGYG  360
ERPERVSLWD IETPENMVFS SPLNSKRQCL PSYGVSGLHV SSISKPQGSP FGNLQHMPGI  420
SSDIALLLLN QSAQNLGSSI ACQQSSFSSI IQNAKQSYFP PTTLGASTGW NESQQQLNAL  480
GIQKGDQVSC DVQPGIDSIT APEMNVKPRV PRSTDSYSSQ SISDPNSKSD PKTKTRRSKK  540
SSSHKTISDK SEISSVPSQI CDKQRHGSEP TSADFEAEQA TCGNNEDSSG ALTRGDFAGE  600
LQVQQVEQDG LLPPPKLESS KSPDGGKSVS SFPNQGCFSQ FFEGLDWMIP PSCYQDSNGI  660
HSVTTSDSIF NPSEGIPPST MNADGMDAFQ TSCLSECFPN SIQEFISSPD INTLTFMSPE  720
MQHLDAQHDG SNLQSTSNSY VQMSFSEESQ SASLSGLHME AVHINSSCLQ PLATGSFDAG  780
TFSKLSNIKE CQALPLQEIH NSSMGTPSCS MDAAAVEYCM DRSVKPLKPP VRTYTKVQKL  840
GSVGRSIDVT RFRDYHELRS AIACMFGLQG KLEHPGSSDW KLVYVDYEND VLLVGDDPWE  900
EFINCVRCIR ILAPSEVQQM SENGVHVLND CMQMA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.01837431390Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.243710.0ear| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G034840
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00153DAPTransfer from AT1G19850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G034840_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0666320.0BT066632.1 Zea mays full-length cDNA clone ZM_BFb0041D15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008668391.10.0auxin response factor 4 isoform X2
SwissprotQ01K260.0ARFK_ORYSI; Auxin response factor 11
SwissprotQ8S9830.0ARFK_ORYSJ; Auxin response factor 11
TrEMBLA0A1D6DUQ80.0A0A1D6DUQ8_MAIZE; Auxin response factor
STRINGGRMZM2G034840_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein
Publications ? help Back to Top
  1. Shen C, et al.
    Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.).
    J. Exp. Bot., 2010. 61(14): p. 3971-81
    [PMID:20693412]
  2. Indoliya Y, et al.
    Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies.
    Sci Rep, 2016. 6: p. 23050
    [PMID:26973288]