PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G034868_P01
Common NameLOC100274145, Zm.80242
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family FAR1
Protein Properties Length: 817aa    MW: 94179.4 Da    PI: 5.1883
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G034868_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.62.4e-2497183290
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         Y++Y++++GFsvrk k+++ + +++i +++++Cskeg +++e+ +  +++ +++etrt+Cka+++ + +++g+w+v+++  eHnHel+
  GRMZM2G034868_P01  97 LYCDYGHRMGFSVRKGKQYYFTGTKTIRTKDYYCSKEGLKDDEQLT--EANFNKPETRTNCKAMVRFRVDSEGQWRVIQIIPEHNHELV 183
                        7*****************************************9988..9999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.1E-2297183IPR004330FAR1 DNA binding domain
PfamPF105513.3E-25295387IPR018289MULE transposase domain
PROSITE profilePS509669.495574612IPR007527Zinc finger, SWIM-type
SMARTSM005756.8E-5587614IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 817 aa     Download sequence    Send to blast
MEGTTISIEI DGEAICLDSV GDNEQEAAEN GEMHQTIYTD ENGEQVAFDN QEQGREEDLA  60
GNGEEDRDHN SIIPSREELT EELRNKVAYS EEEAYRLYCD YGHRMGFSVR KGKQYYFTGT  120
KTIRTKDYYC SKEGLKDDEQ LTEANFNKPE TRTNCKAMVR FRVDSEGQWR VIQIIPEHNH  180
ELVRPEEIHL LRSVRTLSVP KSGVLNAMVN AEIQAMHDNL HINEDGTECH SQLSIRSYTL  240
LEPKECEALV GYFKRRTNEQ CMFYWDVEVD QEGRMTNFFW RDGKSRVDYD SFRDVVIFDT  300
SYLTNKYNMI CAPFIGLNNH RQNVMFGCAF LLDESLTSYE WLFKSFLESV GGRPPETIFT  360
DQNEFISKAI EVVLPGTRHC LCQQLIEKKL MSHLGSINDS GTLHSLFSKC MRECESEAEL  420
DETWAMMHHE YNMQEHPWLT DLYQQRHKWC SALHKDAFDG GIESMDRNES LNNVLSNIDD  480
ESASLSTFVL ELDKLAGSWR KTESLEDIQC NQAAPECTVK HNRILQHAAE VYTHKVYKSI  540
ETDFLDGCSA TSYQAAQCNE TLHKFEFLLE NSPNVSVVFL NTSTMELSCT CKKFETMRIL  600
CSHALNALVL KNVDRIPERY ILNRWTKYAR KGTYPFPVDE FAEQDRTEVA FVYRNRAMWF  660
VYDLLTKSKS HHNTRKLILD ALENGEKSLE SMCDLKRLHM NTLGKEKDGS RVEKRKKKST  720
KQEKHSRNVK QAVLPQTADP VFVDPPNQDQ YFAAEDIASN QSVGRPFFYQ GYPMTVVSTS  780
QIQGHTNMHS EPQCASQEYS AYGTVQPPSQ FGGGRNF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.802420.0embryo| endosperm| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G034868
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G034868_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0690660.0BT069066.1 Zea mays full-length cDNA clone ZM_BFb0161A09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008672512.10.0uncharacterized LOC100274145 isoform X1
TrEMBLC0PL970.0C0PL97_MAIZE; Uncharacterized protein
STRINGGRMZM2G034868_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP1476744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.13e-77FAR1 family protein