PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G036837_P03
Common NameZEAMMB73_121035, Zm.96517
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 471aa    MW: 49727.3 Da    PI: 7.4922
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G036837_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.61.3e-106288127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                       ++++ C +++rtG C +G+rC+++H++
  GRMZM2G036837_P03 62 PGEADCGYYLRTGACGFGERCRYNHPR 88
                       57899********************96 PP
2zf-CCCH37.24.8e-12112137227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        +++ C ++++tGtCk+G++Ck++H++
  GRMZM2G036837_P03 112 GQPVCEYYLKTGTCKFGSNCKYHHPK 137
                        7899********************96 PP
3zf-CCCH40.25.5e-13158182327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +++C+++++tG+Ck+G++CkF+H++
  GRMZM2G036837_P03 158 EKECSYYMKTGQCKFGSTCKFHHPE 182
                        689********************96 PP
4zf-CCCH37.54e-12308334127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +++++C++++rtG Ck+G +Ck++H++
  GRMZM2G036837_P03 308 PGQPECQYYMRTGDCKFGTTCKYNHPR 334
                        5789*********************96 PP
5zf-CCCH31.43.2e-10357380427
                        ---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         +C ++a++G+C+yG  Ck+ H++
  GRMZM2G036837_P03 357 QPCAYYAQNGYCRYGVACKYDHSM 380
                        69********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.6766189IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-56188IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-86388IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-56589IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.0016788IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-7110137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.483110138IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-10112137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-7113139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-6115139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.183155183IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-6155182IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-6157182IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-10158182IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4161181IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.065307335IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5307334IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-9309334IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5311335IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-4313334IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.573353381IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-6353380IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-6354383IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5357380IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-8357379IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MEPPHAEQAV AAVAAGGEGG TASPGTGLEG PVLRRGLDGG GEGEDGELGA GQEANARLPE  60
RPGEADCGYY LRTGACGFGE RCRYNHPRDR GGTEFGGGAK NGAAQDFPER QGQPVCEYYL  120
KTGTCKFGSN CKYHHPKQDG SVQSVILNNN GFPLRLGEKE CSYYMKTGQC KFGSTCKFHH  180
PEFGGIPVTP GIYPPLQSPS VPSPHTYAPN WQMGRSPAVP GSYIPGSYTP MMISSGMVPL  240
QGWSPYPASV NPVASGGAQQ TVQAGPLYGI GHHGSSTAIA YGGTYLPYSS SAGQSSNNHQ  300
EHGFPERPGQ PECQYYMRTG DCKFGTTCKY NHPRDWSTPK SNYMFSHLCL PLRPGAQPCA  360
YYAQNGYCRY GVACKYDHSM GTLGYSSSAL PLSDMPIAPY PISFSVATLA PSSSSPEYIS  420
TKDPSINHVV SPVAGPAPVG AILPKGVFHH DTIMQTQTPT SAGSSSPGGG R
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.965170.0ear| endosperm| meristem| ovary| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G036837
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G036837_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0664260.0BT066426.1 Zea mays full-length cDNA clone ZM_BFc0163G12 mRNA, complete cds.
GenBankBT0862410.0BT086241.1 Zea mays full-length cDNA clone ZM_BFc0136N19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150480.10.0uncharacterized protein LOC100284111
SwissprotQ5NAW20.0C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLC0PDQ70.0C0PDQ7_MAIZE; Zinc finger CCCH domain-containing protein 58
TrEMBLK0DF590.0K0DF59_MAIZE; C3H28 transcription factor (Fragment)
STRINGGRMZM2G036837_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-122C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]