PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G036837_P04
Common NameZEAMMB73_121035, Zm.96517
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 132aa    MW: 13603 Da    PI: 6.2574
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G036837_P04genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.12.3e-116288127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                       ++++ C +++rtG C +G+rC+++H++
  GRMZM2G036837_P04 62 PGEADCGYYLRTGACGFGERCRYNHPR 88
                       57899********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.8E-56188IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6766189IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-96388IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-66589IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-46788IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MEPPHAEQAV AAVAAGGEGG TASPGTGLEG PVLRRGLDGG GEGEDGELGA GQEANARLPE  60
RPGEADCGYY LRTGACGFGE RCRYNHPRDR GGTEVRAGGR FSPASASRSL AFSIFPDLIR  120
VRVRHAAAGE LR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.965171e-159ear| endosperm| meristem| ovary| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G036837
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G036837_P04
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0664261e-156BT066426.1 Zea mays full-length cDNA clone ZM_BFc0163G12 mRNA, complete cds.
GenBankBT0862411e-156BT086241.1 Zea mays full-length cDNA clone ZM_BFc0136N19 mRNA, complete cds.
GenBankJX4284751e-156JX428475.1 Zea mays subsp. mays clone pUT3071 C3H28 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150480.15e-30uncharacterized protein LOC100284111
SwissprotQ5NAW28e-24C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A1D6FBY31e-76A0A1D6FBY3_MAIZE; Zinc finger CCCH domain-containing protein 58
STRINGGRMZM2G036837_P016e-33(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.28e-16C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]