PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G037128_P01
Common NameLOC100502488, ZEAMMB73_815554
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Trihelix
Protein Properties Length: 288aa    MW: 31441.3 Da    PI: 5.018
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G037128_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix102.43.5e-32113197186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        rW+k+ev aLi++r+ +e r+++  lk+plWeevs++m++ g+ rs+k+Ckekwen+nk+++k ke+ kkr + + +tcpyfd+l+
  GRMZM2G037128_P01 113 RWPKHEVEALIRVRTGLEGRFQEPGLKGPLWEEVSARMAAAGYGRSAKRCKEKWENINKYFRKAKESGKKR-PAHAKTCPYFDELD 197
                        8********************************************************************98.99999*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.34106170IPR017877Myb-like domain
SMARTSM007170.0048110172IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-4110169IPR009057Homeodomain-like
CDDcd122032.77E-29112177No hitNo description
PfamPF138371.4E-23112199No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEHQESLHRQ FLEAMERRER DRAARDEAWR RQEADKFARE AAARAQDRAS AAAREAAIIA  60
YLEKISGESI TLPPPASGDE DAAAAGKELV PYEGGDAAAA PEGGGSLHLS SSRWPKHEVE  120
ALIRVRTGLE GRFQEPGLKG PLWEEVSARM AAAGYGRSAK RCKEKWENIN KYFRKAKESG  180
KKRPAHAKTC PYFDELDRLY SRLGQAKQAS SELLDAVVKY PDVRYGPPGF GMDREQASGG  240
GGNNNNTNNE GGQDGGAEDF DGEEDGIGKG RAGDGQDDEV ESHGHEDE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.159570.0ear| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G037128
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00651PBMTransfer from LOC_Os02g01380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G037128_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9640400.0EU964040.1 Zea mays clone 275400 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002453128.11e-123trihelix transcription factor GTL1
SwissprotQ391175e-58TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLK7UTA00.0K7UTA0_MAIZE; Trihelix transcription factor GTL2
STRINGGRMZM2G037128_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.23e-41Trihelix family protein