PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G037200_P01
Common NameLOC100192554
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 350aa    MW: 37812.2 Da    PI: 8.3316
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G037200_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH231.4e-07104127326
                        S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                        +++C++f+++ +C+yG+rC++ H+
  GRMZM2G037200_P01 104 ERPCKYFLAGTECSYGERCRYPHS 127
                        68*******55**********887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.2582854IPR000571Zinc finger, CCCH-type
SMARTSM003560.12953IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-4101128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.14101129IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-5104127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4105127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.88E-5106136IPR000571Zinc finger, CCCH-type
SMARTSM003206.5E-6133172IPR001680WD40 repeat
SuperFamilySSF509781.51E-35136331IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.102.8E-34137331IPR015943WD40/YVTN repeat-like-containing domain
PfamPF004002.4E-6139172IPR001680WD40 repeat
PROSITE profilePS5008214.318140181IPR001680WD40 repeat
PROSITE profilePS5029414.714140331IPR017986WD40-repeat-containing domain
PROSITE patternPS006780159173IPR019775WD40 repeat, conserved site
SMARTSM0032031212249IPR001680WD40 repeat
SMARTSM003200.0093256293IPR001680WD40 repeat
PfamPF004000.022261293IPR001680WD40 repeat
PROSITE profilePS5008211.143263302IPR001680WD40 repeat
PROSITE patternPS006780280294IPR019775WD40 repeat, conserved site
SMARTSM003200.04296333IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDIEADGRFG NKRVHNRLGP GSGGAPPSTN GKVCNYWRAG RCNRFPCPFL HSELPEAAPP  60
KRPTGPGGNV WRNPNTGGRG GGHHNRWGKG PGGGSGIASH KPPERPCKYF LAGTECSYGE  120
RCRYPHSYCI SDSIAMLTLL KGHEQGVTGI ALPAGSDKLY SGSKDGTVRM WDCQTGQCAG  180
VITMGREVGC MIIEGPWLFV GIPDAVKVWN MQTAAEMSLT GPTGQVYALA VASELLFAAT  240
QAGRILAWRF SAATNCFEPA ASLDGHKLAV VSLIVGGMRL YSASMDKTIR VWDLATLQCI  300
QTLSDHTDVV MSVLCWDQFL LSCSLDQTIK VSRHLHHHFV EFGPLQRVET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A7e-171373318319Tako8
6g6n_A7e-171373318319Tako8
6g6n_B7e-171373318319Tako8
6g6n_C7e-171373318319Tako8
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.961470.0ear| embryo| meristem| ovary| root| sheath| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G037200
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G037200_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0345660.0BT034566.1 Zea mays full-length cDNA clone ZM_BFb0001E08 mRNA, complete cds.
GenBankEU9720870.0EU972087.1 Zea mays clone 374674 nucleic acid binding protein mRNA, complete cds.
GenBankJX4285270.0JX428527.1 Zea mays subsp. mays clone pUT3127 C3H34 C3H type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131242.10.0nucleic acid binding protein
SwissprotQ0DYP50.0C3H17_ORYSJ; Zinc finger CCCH domain-containing protein 17
TrEMBLA0A3L6EXE10.0A0A3L6EXE1_MAIZE; Zinc finger CCCH domain-containing protein 17
STRINGGRMZM2G037200_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.21e-125C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]