PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G037823_P01
Common NameLOC103627263, Zm.64386
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Trihelix
Protein Properties Length: 405aa    MW: 46187.9 Da    PI: 6.317
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G037823_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix65.11.5e-2087183184
           trihelix   1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 
                        +Wt  +v++L+ a+++++e++ ++             +++++W+ vs++m erg+ +sp+qC++k+++lnkryk+++e+ +++ +++ +++ 
  GRMZM2G037823_P01  87 KWTSGMVKLLVSAVSYIDEDVDADYgtssgrrkhamlKRMGKWKLVSSAMTERGLAVSPQQCEDKFNDLNKRYKRLTEILGRGrACQIVEKP 178
                        7**************999999975334456777888899*****************************************999568888887 PP

           trihelix  80 pyfdq 84 
                         +++q
  GRMZM2G037823_P01 179 ELLEQ 183
                        77776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.3E-1985210No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MDGNLPPRTL MPGGGPGHFD LGQPFHFAAQ PQAVRVHQGV FAVPAANQMP ELGNVVKASL  60
SDEEEEDDDG HLDHGKAAAA SQWHRVKWTS GMVKLLVSAV SYIDEDVDAD YGTSSGRRKH  120
AMLKRMGKWK LVSSAMTERG LAVSPQQCED KFNDLNKRYK RLTEILGRGR ACQIVEKPEL  180
LEQVSLSAKL REEAKKHLNS KHLHYEEMCS YHNRNRYCLL DDPALQRSLR MALRAPDEQG  240
KKCSFGYDDE DDQMLLSDDD DDDYDDDELH DDLEVSAEDH GPHSHRVHAT KKLKHGHEEG  300
HCGSHLSEVA AIDMNSMFSE GSGGPSAEKN LSYMRAQIET QRLNIKSQKL RTEQRHFKWL  360
KFSREKDREL QKMKLENEKM ELENERLELE LKLKEIEMGI KPKRI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.851940.0embryo| endosperm| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G037823
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G037823_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279500.0KJ727950.1 Zea mays clone pUT6048 trihelix transcription factor (THX42) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008645772.10.0uncharacterized protein LOC103627263
TrEMBLA0A1D6HA580.0A0A1D6HA58_MAIZE; Uncharacterized protein
STRINGGRMZM2G037823_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127742636
Representative plantOGRP1303645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.14e-57sequence-specific DNA binding transcription factors