PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G038015_P01

Common Name

bZIP24, LOC103644612

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

bZIP

Protein Properties

Length: 176aa MW: 19287.5 Da PI: 10.1916

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G038015_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.9	6.1e-10	20	64	3	47
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 e +r r+ +NR++Ar+sR +++ ++ L+ +++ L eN+a++ GRMZM2G038015_P01 20 EERRRNRMTSNRLSARKSRMKRQRHVDDLAAEAERLRRENEAMRA 64 567889************************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.4E-10	18	82	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	1.7E-6	19	65	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.944	20	83	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.1E-8	21	64	No hit	No description
SuperFamily	SSF57959	1.13E-7	22	64	No hit	No description
CDD	cd14702	1.06E-13	23	69	No hit	No description
PROSITE pattern	PS00036	0	26	40	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MVPLAGAQGA RRAAVVITEE ERRRNRMTSN RLSARKSRMK RQRHVDDLAA EAERLRRENE 60 AMRAGVGDAV LRSRALEQEN RVLAAHARQL CAALLLRNSQ LSLLGDVAGV PLDVPGVPDH 120 LVQLYGGVQV PVMPLSPSVM PLSPSPPPPL HLQLPLEIQL MLLQPDVMDA VGMLEL

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G038015

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G038015_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ728266	0.0	KJ728266.1 Zea mays clone pUT6543 bZIP transcription factor (bZIP24) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008666012.1	1e-119	bZIP transcription factor 53
TrEMBL	A0A060D2L0	1e-118	A0A060D2L0_MAIZE; BZIP transcription factor (Fragment)
STRING	GRMZM2G038015_P01	1e-118	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12504	28	37
Representative plant	OGRP11972	4	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G62420.1	5e-11	basic region/leucine zipper motif 53

Link Out ? help Back to Top
Phytozome	GRMZM2G038015_P01
Entrez Gene	103644612