PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G038878_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family M-type_MADS
Protein Properties Length: 194aa    MW: 20596.7 Da    PI: 10.467
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G038878_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.22.1e-13955150
                       S---SHHHHHHHH.HHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  1 krienksnrqvtf.skRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       krien   r+vtf skRr+g+l     L vLCd++v v +fs++gk++ y+
  GRMZM2G038878_P01  9 KRIENRVSRHVTFfSKRRKGLL----NLAVLCDVDVGVGVFSERGKVFQYP 55
                       79**********559******9....699********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.9E-17157IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.231158IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-13155IPR002100Transcription factor, MADS-box
PfamPF003199.1E-121054IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MGRAKVESKR IENRVSRHVT FFSKRRKGLL NLAVLCDVDV GVGVFSERGK VFQYPGLAGQ  60
AVLPPSPSSF GFLVKNNVAM AKTILAIVAI ISLLVPPAAA TDHDSYNAAP APVPSSKFPT  120
AAAAPTEYDA ADEDKKKSIL PIVLVVAIAS LSMASLSGDS PVRAMAWKGP SSTPRAGSEE  180
DHGSEVSQRR RAWR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G038878
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G038878_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020394837.12e-71uncharacterized protein LOC103629878
TrEMBLA0A1D6LUS81e-137A0A1D6LUS8_MAIZE; Putative MADS-box transcription factor family protein
STRINGGRMZM2G038878_P011e-138(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.17e-16AGAMOUS-like 6