PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G039074_P02
Common NameGLK23, Zm.20467
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 427aa    MW: 45382.6 Da    PI: 10.3321
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G039074_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1001.6e-31111164255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        pr+rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  GRMZM2G039074_P02 111 PRMRWTTALHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 164
                        9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-28108164IPR009057Homeodomain-like
SuperFamilySSF466892.69E-15108164IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-23111164IPR006447Myb domain, plants
PfamPF002493.7E-7112163IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0009089anatomyendosperm
PO:0020127anatomyprimary root
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MATTTAAAPD LSLHISPPSP PDDARSSDVL FSKQTLCLGL VQTTTAAAHD QDGQCDDVQQ  60
QQRQRLHQQP SQIQRFKKTS SSSAALLSAG GGTTRSGNGN SGGGKRSSRA PRMRWTTALH  120
AHFVHAVELL GGHERATPKS VLELMNVKDL TLAHVKSHLQ MYRTVKGTTA DRSCAAGHVQ  180
MRDMGFLHRG CELNGFEAFS NGTSNATANN RMQAAAGSPA GKHAEVAWFL RPPLAHQSSG  240
GGGGGGAVPL PLPLPCPYLM SAHHNRYLLS QNQGWRTRGA HQQDAAAPPP LVLGQQDSAR  300
RLHPGFPDTA ISSSRPSSWS AGVASRWSSS TAAAPSPSSG RSSISSGTEQ PAACSWTMMT  360
TNKQQQQPPP STSSSSRVVA VPNLEMSLGR QGWQHDLQDH HPQQQQQQRS GESTAPKELT  420
PGLLKCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-16112166357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-16112166357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-16112166357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-16112166357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.204670.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G039074
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G039074_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0373980.0BT037398.1 Zea mays full-length cDNA clone ZM_BFb0167O11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001136686.10.0uncharacterized protein LOC100216818
TrEMBLB4FJW00.0B4FJW0_MAIZE; G2-like transcription factor
STRINGGRMZM2G039074_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37423168
Representative plantOGRP1584333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.22e-31G2-like family protein