PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G039889_P02
Common NameZEAMMB73_943527, Zm.67905
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 165aa    MW: 18173.8 Da    PI: 7.754
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G039889_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.5e-081171026
                       GGTS--TTTTT-SS-SS CS
            zf-CCCH 10 artGtCkyGdrCkFaHg 26
                       ++tG CkyG+ C+F+H+
  GRMZM2G039889_P02  1 MKTGSCKYGSICRFNHP 17
                       89**************9 PP
2zf-CCCH36.21e-116084226
                       -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                       ++  C+f+++tG Cky  +CkF+H+
  GRMZM2G039889_P02 60 GETVCDFYMKTGSCKYSQKCKFHHP 84
                       6789********************8 PP
3zf-CCCH34.24.3e-11114137427
                        ---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                        e C f++r+G C++G+ CkF H+p
  GRMZM2G039889_P02 114 EACAFYMRSGMCRFGAHCKFDHPP 137
                        78********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.399119IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-5117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-75687IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-55885IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.8735886IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-96084IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-66384IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.314110138IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-5110137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6112139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-5114139IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-8114137IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MKTGSCKYGS ICRFNHPDRP GPAADIAFMV PLVQATLPSS APIVPAVVEP LPMIYPQRPG  60
ETVCDFYMKT GSCKYSQKCK FHHPISRFAP HSKENGDPQQ PATLASLPRR EDAEACAFYM  120
RSGMCRFGAH CKFDHPPREE AISELQAAGK EGIEGPSLVQ RDHDV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.679050.0ear| embryo| endosperm| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G039889
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G039889_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0183960.0BT018396.1 Zea mays clone EL01N0320H11.d mRNA sequence.
GenBankBT0372320.0BT037232.1 Zea mays full-length cDNA clone ZM_BFb0159O15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001346414.11e-119uncharacterized protein LOC100216717
RefseqXP_020397512.11e-117uncharacterized protein LOC100216717 isoform X2
SwissprotQ5ZDJ62e-49C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLA0A1D6FZD11e-119A0A1D6FZD1_MAIZE; Zinc finger CCCH domain-containing protein 37
TrEMBLB4FJE41e-119B4FJE4_MAIZE; Uncharacterized protein
STRINGGRMZM2G039889_P061e-118(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-39floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]