PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G039889_P04
Common NameZEAMMB73_943527, Zm.67905
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 170aa    MW: 18674.3 Da    PI: 8.4063
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G039889_P04genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.92.6e-117498327
                       S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                       +++C f+a+tG Ck+G+ CkF+H++
  GRMZM2G039889_P04 74 EPICVFYAKTGKCKFGAICKFNHPK 98
                       799********************96 PP
2zf-CCCH39.31.1e-12136160226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        +++ C+f+++tG CkyG+ C+F+H+
  GRMZM2G039889_P04 136 GEVDCSFYMKTGSCKYGSICRFNHP 160
                        6899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.212046IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2632047IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-57198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6057199IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-67199IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-87498IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-57697IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5134161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582134162IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-10136160IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-6138161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-5140159IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MSARDDPRKA PNVEDSYPER PGEPDCPYLL NNRCKFKSKC KFNHPKDMVN ALGTGTNNES  60
LIADSAVLPV RPSEPICVFY AKTGKCKFGA ICKFNHPKDI KTSPLIAKET IYTATTDAAD  120
APTEACNAKG LPIRQGEVDC SFYMKTGSCK YGSICRFNHP DRPGPGLFFS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.679050.0ear| embryo| endosperm| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G039889
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G039889_P04
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0649440.0BT064944.1 Zea mays full-length cDNA clone ZM_BFc0042H04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001346414.11e-118uncharacterized protein LOC100216717
SwissprotQ5ZDJ64e-61C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLC0P9H51e-122C0P9H5_MAIZE; Uncharacterized protein
STRINGGRMZM2G039889_P061e-112(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.13e-47floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]