PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G039889_P05
Common NameZEAMMB73_943527, Zm.67905
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 308aa    MW: 33844.6 Da    PI: 7.883
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G039889_P05genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.75.9e-117498327
                       S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                       +++C f+a+tG Ck+G+ CkF+H++
  GRMZM2G039889_P05 74 EPICVFYAKTGKCKFGAICKFNHPK 98
                       799********************96 PP
2zf-CCCH38.12.5e-12136160226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        +++ C+f+++tG CkyG+ C+F+H+
  GRMZM2G039889_P05 136 GEVDCSFYMKTGSCKYGSICRFNHP 160
                        6899********************9 PP
3zf-CCCH352.4e-11203227226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        ++  C+f+++tG Cky  +CkF+H+
  GRMZM2G039889_P05 203 GETVCDFYMKTGSCKYSQKCKFHHP 227
                        6789********************8 PP
4zf-CCCH331e-10257280427
                        ---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                        e C f++r+G C++G+ CkF H+p
  GRMZM2G039889_P05 257 EACAFYMRSGMCRFGAHCKFDHPP 280
                        78********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.212046IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2632047IPR000571Zinc finger, CCCH-type
PfamPF146080.23245No hitNo description
SMARTSM003561.2E-57198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6057199IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-57199IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-87498IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-57697IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5134161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582134162IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-10136160IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5138161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-5140159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-7199230IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5201228IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.873201229IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-9203227IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5206227IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-5253280IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.314253281IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6255282IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4257282IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-7257280IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0004006anatomymesophyll cell
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0025589anatomyleaf lamina tip
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MSARDDPRKA PNVEDSYPER PGEPDCPYLL NNRCKFKSKC KFNHPKDMVN ALGTGTNNES  60
LIADSAVLPV RPSEPICVFY AKTGKCKFGA ICKFNHPKDI KTSPLIAKET IYTATTDAAD  120
APTEACNAKG LPIRQGEVDC SFYMKTGSCK YGSICRFNHP DRPGPAADIA FMVPLVQATL  180
PSSAPIVPAV VEPLPMIYPQ RPGETVCDFY MKTGSCKYSQ KCKFHHPISR FAPHSKENGD  240
PQQPATLASL PRREDAEACA FYMRSGMCRF GAHCKFDHPP REEAISELQA AGKEGIEGPS  300
LVQRDHDV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.679050.0ear| embryo| endosperm| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G039889
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G039889_P05
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9726540.0EU972654.1 Zea mays clone 385299 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001346414.10.0uncharacterized protein LOC100216717
SwissprotQ5ZDJ61e-109C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLK7UZM00.0K7UZM0_MAIZE; Zinc finger CCCH domain-containing protein 37
STRINGGRMZM2G039889_P060.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.13e-82floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]