PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G039889_P06
Common NameZEAMMB73_943527, Zm.67905
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 333aa    MW: 36762.1 Da    PI: 7.9883
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G039889_P06genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61e-08103123727
                        SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   7 rffartGtCkyGdrCkFaHgp 27 
                        +f+a+tG Ck+G+ CkF+H++
  GRMZM2G039889_P06 103 QFYAKTGKCKFGAICKFNHPK 123
                        59*****************96 PP
2zf-CCCH382.8e-12161185226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        +++ C+f+++tG CkyG+ C+F+H+
  GRMZM2G039889_P06 161 GEVDCSFYMKTGSCKYGSICRFNHP 185
                        6899********************9 PP
3zf-CCCH34.92.7e-11228252226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        ++  C+f+++tG Cky  +CkF+H+
  GRMZM2G039889_P06 228 GETVCDFYMKTGSCKYSQKCKFHHP 252
                        6789********************8 PP
4zf-CCCH32.81.1e-10282305427
                        ---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                        e C f++r+G C++G+ CkF H+p
  GRMZM2G039889_P06 282 EACAFYMRSGMCRFGAHCKFDHPP 305
                        78********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.2632047IPR000571Zinc finger, CCCH-type
SMARTSM003560.212046IPR000571Zinc finger, CCCH-type
SMARTSM003562.796123IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-6103123IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.347103124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582159187IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5159186IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9161185IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5163186IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4165184IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-7224255IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.873226254IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5226253IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-9228252IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5231252IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.314278306IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-5278305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6280307IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-7282305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4282307IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MSARDDPRKA PNVEDSYPER PGEPDCPYLL NNRCKFKSKC KFNHPKDMVN ALGTGTNNES  60
LIADSAVLPV RPSEPICVVR SYIAVIFFFS WHSPSFLGCP VFQFYAKTGK CKFGAICKFN  120
HPKDIKTSPL IAKETIYTAT TDAADAPTEA CNAKGLPIRQ GEVDCSFYMK TGSCKYGSIC  180
RFNHPDRPGP AADIAFMVPL VQATLPSSAP IVPAVVEPLP MIYPQRPGET VCDFYMKTGS  240
CKYSQKCKFH HPISRFAPHS KENGDPQQPA TLASLPRRED AEACAFYMRS GMCRFGAHCK  300
FDHPPREEAI SELQAAGKEG IEGPSLVQRD HDV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.679050.0ear| embryo| endosperm| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G039889
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G039889_P06
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0372320.0BT037232.1 Zea mays full-length cDNA clone ZM_BFb0159O15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020397511.10.0uncharacterized protein LOC100216717 isoform X1
SwissprotQ5ZDJ61e-102C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLA0A1D6FZC10.0A0A1D6FZC1_MAIZE; Zinc finger CCCH domain-containing protein 37
STRINGGRMZM2G039889_P060.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Representative plantOGRP67541519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.12e-76floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]