PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G041127_P03
Common Namehdz10, si606017c07
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HD-ZIP
Protein Properties Length: 274aa    MW: 29643.9 Da    PI: 4.3511
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G041127_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.23.4e-1952105356
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        k++++++eq+++Le+ Fe ++++  e++++LA+ lgL+ rqV vWFqNrRa++k
  GRMZM2G041127_P03  52 KKRRLSAEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWK 105
                        45689************************************************9 PP
2HD-ZIP_I/II132.91.2e-4251143193
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                        ekkrrls+eqv++LE+sFe e+kLeperK++lar+LglqprqvavWFqnrRAR+ktkqlE+dy+aL+r+ydal+ ++++L++++++L +e++
  GRMZM2G041127_P03  51 EKKRRLSAEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRRSYDALRLDHDALRRDKDALLAEIR 142
                        69*************************************************************************************99998 PP

        HD-ZIP_I/II  93 e 93 
                        e
  GRMZM2G041127_P03 143 E 143
                        6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.94E-2041109IPR009057Homeodomain-like
PROSITE profilePS5007117.47547107IPR001356Homeobox domain
SMARTSM003891.5E-1850111IPR001356Homeobox domain
PfamPF000461.6E-1652105IPR001356Homeobox domain
CDDcd000866.52E-1852108No hitNo description
Gene3DG3DSA:1.10.10.603.6E-2053114IPR009057Homeodomain-like
PRINTSPR000319.3E-67887IPR000047Helix-turn-helix motif
PROSITE patternPS00027082105IPR017970Homeobox, conserved site
PRINTSPR000319.3E-687103IPR000047Helix-turn-helix motif
PfamPF021831.5E-17107148IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MSWRECVRNE DLSPCACVFP DDGYGVLGME ADVDVDVDEE MMAFGGGGGG EKKRRLSAEQ  60
VRALERSFEV ENKLEPERKA RLARDLGLQP RQVAVWFQNR RARWKTKQLE RDYAALRRSY  120
DALRLDHDAL RRDKDALLAE IRELKAKLGD DEDAAASFTS VKAEPAASDG PAPAGVGSSE  180
ISDSSAVLND ADPPVAEAPA PAPEVQGTLL VAPAGPVAGA AAANHGGVFF HGSFLKVEED  240
ETGLLDDDGP CGGFFAVEQP PAMAWWNEPA EHWN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17682ERKARLA
299107RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.847490.0ear| endosperm| meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G041127
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf and floral organ primordia, floral meristems, embryonic axis and cells surrounding the vascular bundles. Expressed in the vasculature of roots, stem, leaves and spikelets, and in the vascular bundle of the scutellum in embryos. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
UniprotTISSUE SPECIFICITY: Expressed in leaf and floral organ primordia, floral meristems, embryonic axis and cells surrounding the vascular bundles. Expressed in the vasculature of roots, stem, leaves and spikelets, and in the vascular bundle of the scutellum in embryos. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}.
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}.
Function -- GeneRIF ? help Back to Top
  1. Zmhdz10 functions as a transcriptional regulator that can positively regulate drought and salt tolerance in plants through an ABA-dependent signaling pathway.
    [PMID: 24817160]
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G041127_P03
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
UniProtINDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5148320.0JX514832.1 Zea mays cultivar B73 homeodomain leucine zipper protein 10 (hdz10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008667301.10.0homeodomain leucine zipper protein 10 isoform X1
SwissprotQ6K4981e-110HOX4_ORYSJ; Homeobox-leucine zipper protein HOX4
SwissprotQ9XH371e-110HOX4_ORYSI; Homeobox-leucine zipper protein HOX4
TrEMBLK0E8730.0K0E873_MAIZE; Homeodomain leucine zipper protein 10
STRINGGRMZM2G041127_P040.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30093482
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.11e-49homeobox protein 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhao Y, et al.
    A novel maize homeodomain-leucine zipper (HD-Zip) I gene, Zmhdz10, positively regulates drought and salt tolerance in both rice and Arabidopsis.
    Plant Cell Physiol., 2014. 55(6): p. 1142-56
    [PMID:24817160]