PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G041462_P01
Common NameHB128, LOC100502166
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HD-ZIP
Protein Properties Length: 239aa    MW: 26235 Da    PI: 5.2169
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G041462_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.3e-193084256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                       +++ +f++eq++ Le++F+ + ++  +++ +LA++lgL+ rqV +WFqN+Ra++k
  GRMZM2G041462_P01 30 KNKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWK 84
                       67789*************************************************9 PP
2HD-ZIP_I/II123.11.3e-3931122293
        HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                        +k+r+s+eq+k+LE++F +++kLep++K +lareLglqprqva+WFqn+RAR+k+kqlE+dy+aL++ ydal  + e+L+ke+++L ++l++
  GRMZM2G041462_P01  31 NKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDYSALRDDYDALLCSYESLKKEKHTLLKQLEK 122
                        79*************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.6E-191988IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-202286IPR009057Homeodomain-like
PROSITE profilePS5007117.3622686IPR001356Homeobox domain
SMARTSM003891.9E-162990IPR001356Homeobox domain
CDDcd000861.27E-173087No hitNo description
PfamPF000465.1E-173084IPR001356Homeobox domain
PRINTSPR000317.8E-65766IPR000047Helix-turn-helix motif
PROSITE patternPS0002706184IPR017970Homeobox, conserved site
PRINTSPR000317.8E-66682IPR000047Helix-turn-helix motif
PfamPF021831.2E-1386127IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MEGDDDGPEW MMEVGGAGAT GKGKGGALDK NKKRFSEEQI KSLESMFATQ TKLEPRQKLQ  60
LARELGLQPR QVAIWFQNKR ARWKSKQLER DYSALRDDYD ALLCSYESLK KEKHTLLKQL  120
EKLAEMLHEP RGKYSGNADA AGAGDDVRSG VGGMKDEFAD AGAAPYSSEG GGGGKFAHFT  180
DDDVGALFRP SSPQPSAAGF TSSGPPEHQP FQFHSGCWPS STEQTCSSSQ WWEFESLSE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1196950.0endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G041462
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00650PBMTransfer from LOC_Os09g35910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G041462_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0872580.0BT087258.1 Zea mays full-length cDNA clone ZM_BFb0020F23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001183573.11e-176uncharacterized protein LOC100502166
SwissprotQ651Z52e-94HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6
SwissprotQ9XH352e-94HOX6_ORYSI; Homeobox-leucine zipper protein HOX6
TrEMBLA0A3L6DV531e-175A0A3L6DV53_MAIZE; Homeobox-leucine zipper protein HOX6
TrEMBLC4J8W11e-175C4J8W1_MAIZE; Homeobox-leucine zipper protein ATHB-12
STRINGGRMZM2G041462_P011e-175(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78733448
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.14e-42homeobox 7
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]