PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G041799_P01
Common NameLOC100286049, ZEAMMB73_289641
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 649aa    MW: 71064.2 Da    PI: 4.8003
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G041799_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.86.7e-07113133425
                        ---SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                        ++C +f++ G C  GdrC F H
  GRMZM2G041799_P01 113 VPCYYFQK-GMCTKGDRCAFLH 133
                        69******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.9E-41543IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.6381544IPR000571Zinc finger, CCCH-type
PfamPF156632.6E-111672No hitNo description
PROSITE profilePS5010310.8874672IPR000571Zinc finger, CCCH-type
SMARTSM0035654871IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.474109136IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-6110135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-5111134IPR000571Zinc finger, CCCH-type
PfamPF146080.84114133No hitNo description
Gene3DG3DSA:4.10.1000.101.8E-4114134IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0004006anatomymesophyll cell
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0025589anatomyleaf lamina tip
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MDSAAARPDE EEARRRRSTD CIYFLASPLT CKKGSECEYR HSDAARMNPR DCWYWFHGNC  60
ANPKCSFRHP PLDNMAGAPT TPRPAQQSVP HQASASVPAQ PQGSVPATAK QGVPCYYFQK  120
GMCTKGDRCA FLHAPRSAGN PAPQPPAKVF TTPALQPNLH PPLNNSWTKP NLSAPAVAVV  180
DKPKASTYHD GKPLHHKENL TSRTENPSRV VYQNHSSSYA QPGAPKRYQP QPSARDGLTD  240
NGMEAGEFAR EPSAGSCVTA GFNGAGGMTR QTHGGYEPER SYRNSAERSS SEKRIPQREH  300
IPSVAAGSSD LRHRLLKQRK SNNNSRSAEA LGRHDTHLED ERNDQHRPRG EQQDGLSRSR  360
LHDRIRLPGE TAFDSLGSRS EEWDRGSRAR LSPPKSSDLR GRLHERLKGR LGEEIPGSSA  420
KGLAVKASSS EDTESLNFAG PKSLAELKAK KGVGRSGEDA VVKGLGSSRM TSEIVWSREA  480
ASFEGPKPLS AILKRKREPA SEIPAAQPGI TQEADNYAAG AEEEIQTLAN DTVGENMEGI  540
GEEEEEEEAF HPEDDVAYDD NANEAAVAQE LDEYEDADAA AQDYDDEAAA AQEVEEHQDG  600
EAAAEDYDYE EADVNAEEEN EYQDYQDEDD DDLEDGDDDF ARKVSVMIS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.59640.0ear| endosperm| meristem| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G041799
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G041799_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9753420.0EU975342.1 Zea mays clone 488116 zinc finger C-x8-C-x5-C-x3-H type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152409.10.0zinc finger C-x8-C-x5-C-x3-H type family protein
SwissprotQ6K9770.0C3H19_ORYSJ; Zinc finger CCCH domain-containing protein 19
TrEMBLA0A3L6F2M40.0A0A3L6F2M4_MAIZE; Zinc finger CCCH domain-containing protein 19
TrEMBLK7UZL90.0K7UZL9_MAIZE; Zinc finger C-x8-C-x5-C-x3-H type family protein
STRINGGRMZM2G041799_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130972123
Representative plantOGRP24551220
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]