PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G041839_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 270aa    MW: 28857 Da    PI: 4.7441
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G041839_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.8e-1987136255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GVr +  +g+Wv+eIr+p++   + r++lg+f+t+e+Aa+a++ a+++++g
  GRMZM2G041839_P01  87 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFDTPEMAARAHDVAALAIKG 136
                        69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.9E-3687150IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2187144IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.0E-3287144IPR001471AP2/ERF domain
PfamPF008476.4E-1387136IPR001471AP2/ERF domain
PROSITE profilePS5103223.18287144IPR001471AP2/ERF domain
PRINTSPR003671.4E-108899IPR001471AP2/ERF domain
CDDcd000188.23E-3388144No hitNo description
PRINTSPR003671.4E-10110126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGGIIEQTLD AVLPWLRRFA SFAQCSSLME EERALSPVSD ASTTCSSSGG TGPNSPITSS  60
QSVDDTCGGA GSSSSRKRPR RELKHPTYRG VRMRAWGKWV SEIREPRKKS RIWLGTFDTP  120
EMAARAHDVA ALAIKGRAAH LNFPGMSHEL PRAASAAPED VRAAAALAAA MEMESVAPPT  180
PPGDSSHSAR NDENEEPAAS SSSGNDADNA QSEEQAAPSE HSVLADGHVL DLALFELPDV  240
LLEFGFAPPP PLTSCAYDLS WDEPLLLWEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-18851441272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G041839
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G041839_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9701800.0EU970180.1 Zea mays clone 341615 dehydration-responsive element-binding protein 1B mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008646011.10.0ethylene-responsive transcription factor ERF043
TrEMBLA0A1D6HF211e-180A0A1D6HF21_MAIZE; Ethylene-responsive transcription factor ERF035
STRINGGRMZM2G041839_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.17e-37ERF family protein