PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G042756_P01
Common NameLOC100281239
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 222aa    MW: 24031.7 Da    PI: 5.1594
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G042756_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.3e-174898155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       + ykGVr +   grWv+e+r+p   g r+r++lg+f tae+Aa+a++ a+++l+g
  GRMZM2G042756_P01 48 PVYKGVRSRN-PGRWVCEVREP--HG-RQRIWLGTFETAEMAARAHDVAALALRG 98
                       68****9666.9******9996..33.5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-124898IPR001471AP2/ERF domain
SMARTSM003801.6E-2749112IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-2049107IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.1E-3049108IPR001471AP2/ERF domain
PROSITE profilePS5103221.48349106IPR001471AP2/ERF domain
CDDcd000186.24E-1950108No hitNo description
PRINTSPR003675.7E-85061IPR001471AP2/ERF domain
PRINTSPR003675.7E-87288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009631Biological Processcold acclimation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MDWAYYGSGY STPASGGGGG DEDAYMTVSS APPKRRAGRT KFKETRHPVY KGVRSRNPGR  60
WVCEVREPHG RQRIWLGTFE TAEMAARAHD VAALALRGRA ACLNFADSPR RLRVPAQGAG  120
HDEIRRAAVE AAELFRPQPG ERNVGGSEAA AEAAAAAPCA MGSGDLGGGE FPYYPVDDGL  180
EFEMRGYLDM AQGMLIDPPQ PAAGQSAWIE DEYECEVSLW SY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-13471051271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.15240.0aerial organ
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G042756
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00452DAPTransfer from AT4G25470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G042756_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9560440.0EU956044.1 Zea mays clone 1556129 dehydration-responsive element-binding protein 1D mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147630.11e-161dehydration-responsive element-binding protein 1D
SwissprotA2XWL61e-107DRE1E_ORYSI; Dehydration-responsive element-binding protein 1E
SwissprotQ8H2731e-107DRE1E_ORYSJ; Dehydration-responsive element-binding protein 1E
TrEMBLB6STH91e-160B6STH9_MAIZE; Dehydration-responsive element-binding protein 1D
STRINGGRMZM2G042756_P011e-161(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.11e-38C-repeat-binding factor 4
Publications ? help Back to Top
  1. Chen JQ,Meng XP,Zhang Y,Xia M,Wang XP
    Over-expression of OsDREB genes lead to enhanced drought tolerance in rice.
    Biotechnol. Lett., 2008. 30(12): p. 2191-8
    [PMID:18779926]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  3. Li S, et al.
    Mutation of OsGIGANTEA Leads to Enhanced Tolerance to Polyethylene Glycol-Generated Osmotic Stress in Rice.
    Front Plant Sci, 2016. 7: p. 465
    [PMID:27148296]